Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' (RefSeq) from Shewanella amazonensis SB2B

 Score =  230 bits (587), Expect = 4e-64
 Identities = 233/930 (25%), Positives = 390/930 (41%), Gaps = 178/930 (19%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   I  GL SP+ IR+ S  ++   +T +   + P   GL   R+ G +         
Sbjct: 15  EEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCARIFGPVKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V          GHIEL+ PV HI F K +   +  +      +
Sbjct: 75  YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSLPSRIGLMLD----M 130

Query: 109 TITEIKRDEYLEKMAKLEE-----DGGDPWTLCD--DLLKEAAKGSVCPSCGEVKADV-- 159
           T+ +I+R  Y E    +E      + G   T  +  D L+E           E   D+  
Sbjct: 131 TLRDIERVLYFESYVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKMGAEAVLDLLR 190

Query: 160 KYDKPTAYHQLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPP 219
             D      Q+  +     + +  +++ +++   +      N    +PE+M+L VLPV P
Sbjct: 191 AIDLEKEIEQMREELPSINSETRRKKVTKRLKLIEAFYTSGN----KPEWMILKVLPVLP 246

Query: 220 VTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTY 279
             +RP + L+ G  +  DL      +I  N RL+  ++  AP++I+ +   +LQ  ++  
Sbjct: 247 PDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQESVDAL 306

Query: 280 FDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINE 339
            DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+  P L +++
Sbjct: 307 LDNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPTLRLHQ 365

Query: 340 VGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKI 399
            G+PK +A EL  P                          ++  K+   +G+     IK 
Sbjct: 366 CGLPKKMALELFKP--------------------------FIYGKL---EGRGLATTIKA 396

Query: 400 TDANKDMWVENITDGM--VIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNL 457
                +  V  + D +  VI  H      V+ NR P+LHR+ I A +  ++  +  + + 
Sbjct: 397 AKKMVEREVAEVWDVLDEVIREH-----PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451

Query: 458 CVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAY 517
            VC  YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D + G Y
Sbjct: 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLY 511

Query: 518 VLTSSLFT-KDEALTLLK---------------SSGLNVELGEPDVIENN--------IE 553
            ++      + EA+                    + + V + E  + EN         ++
Sbjct: 512 YISRERVNGRGEAMAFESVAEAEKAYRVGAAELHARVKVRITETIIGENGERTKQRRIVD 571

Query: 554 YYSGKSLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFG 613
              G+++ S+ LP GLS                                   +++++   
Sbjct: 572 TTVGRAILSQILPAGLSFD---------------------------------LVNQDMGK 598

Query: 614 SEAGIVLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLL 673
            +   +LNT  +  G +D  +F D       +   + G + GI+D  IP E    + D  
Sbjct: 599 KQISKLLNTCYRQLGLKDTVIFADQLMYTGFQYATISGASVGINDMVIPEEKYSLVAD-- 656

Query: 674 NKAEQDVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE--- 730
             AE +V +I E++++G + +         R   ++ I   A ++      + LS E   
Sbjct: 657 --AEAEVIEIQEQFQSGLVTA-------GERYNKVIDIWASANEKVSKAMMENLSSETVI 707

Query: 731 ------------NHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFG 778
                       N   +MA +GARGS   I  +A   G  +   G +             
Sbjct: 708 NRHGEEEKQKSFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP--------- 758

Query: 779 KGSLDAKSHGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD- 837
                      + + +++GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD 
Sbjct: 759 -----------IVANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807

Query: 838 IRAEYDGTVRDSRGLVVQFEYGEDLVDPAK 867
           +  E D    +   +    E G D+V+P +
Sbjct: 808 VIIEDDCGATEGLSMKPLIE-GGDVVEPLR 836