Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1393 a.a., DNA-directed RNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  234 bits (597), Expect = 3e-65
 Identities = 233/876 (26%), Positives = 379/876 (43%), Gaps = 150/876 (17%)

Query: 13  ITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------------ 58
           I   + SPE+IR+ S  +I   +T +   + P   GL   R+ G I              
Sbjct: 20  IKISIASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMK 79

Query: 59  --GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKVTITEI 113
             G++C+ C   V          GHIEL+ PV HI F K +   +  +      +T+ ++
Sbjct: 80  YRGIICEKCGVEVTLSKVRRERMGHIELAAPVAHIWFMKSLPSRVGLLID----MTLKDL 135

Query: 114 KRDEYLEKMAKLEEDGGDPWTLCDDL--------LKEAAKGSVCPSCG-EVKADVKYDKP 164
           +R  Y E    +E  G  P  L + L        ++E  + S     G E   D+     
Sbjct: 136 ERVLYFENYVVVEP-GLTPLKLHEMLSEEQYQRAVEEYGEDSFTAGIGAEAIRDMLMSID 194

Query: 165 TAYHQLDGKAQKQLTSSEVR--EILEKIPAEDCKLLGINAKVARPEFMVLTVLPVPPVTV 222
               + D K + + T+SE +  ++++++   D  +        RPE+M+L V+PV P  +
Sbjct: 195 LETLKTDMKVELRDTTSEAKRKKLVKRLKIVDAFI----ESGCRPEWMILEVIPVIPPEL 250

Query: 223 RPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYFDN 282
           RP + L+ G  +  DL      +I  N RL+  I   AP++II +   +LQ  ++  FDN
Sbjct: 251 RPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQESVDALFDN 310

Query: 283 EAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEVGI 342
              G       + RPL++L+  LKGK+GRFR NL GKRV++S R+VI   P L +++ G+
Sbjct: 311 GRRG-RAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGL 369

Query: 343 PKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKITDA 402
           PK +A EL  P                          +V  K+     ++  Y   I  A
Sbjct: 370 PKKMALELFKP--------------------------FVYSKL-----EQYHYATTIKAA 398

Query: 403 NKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPP 462
            + +  E      ++E  + +  ++L NR P+LHR+ I A +  ++  +  + +  VC  
Sbjct: 399 KRMVEKERPEVWDILEEVIREHPVML-NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTA 457

Query: 463 YNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLT-- 520
           +NADFDGD+M VHVP S EA+ EA  LM+   +I+SP  G PII    D + G Y LT  
Sbjct: 458 FNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGKPIIVPTQDIVLGLYYLTLD 517

Query: 521 -----------SSLFTKDEAL-TLLKSSGLNVELGEPDVIEN------NIEYYSGKSLFS 562
                      +SL   + AL   + S    V+     + EN       +E   G+ L S
Sbjct: 518 REGEKGEGMAFASLNEIEHALQARVVSLQARVKARLHTIDENGAPVIRTVETTPGRMLLS 577

Query: 563 KTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGIVLNT 622
           + LP   +L +                                VI++     +   V++T
Sbjct: 578 RLLPRHTALPF-------------------------------SVINRLLRKKDITDVIDT 606

Query: 623 LVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVED 682
           + +  G ++  +F D   ++        G + G DD  IP    Q + D     + +V++
Sbjct: 607 VYRHCGQKETVIFCDRVMQLGYAHAARAGISFGKDDLVIPPTKAQLVAD----TDAEVKE 662

Query: 683 IVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE-NHAALMARTGA 741
             ++Y++G +    G    +  +A+       A +    +A+    K  N   +MA +GA
Sbjct: 663 FEQQYQDGLITQ--GEKYNKVVDAWSHCTERVADEMMKEIAKIEPGKPVNSVYMMAHSGA 720

Query: 742 RGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCYKKGLAPT 801
           RGS   +  +A   G  +   G +                        + S +K+GL   
Sbjct: 721 RGSAAQMKQLAGMRGLMAKPSGEIIETP--------------------IVSNFKEGLTVL 760

Query: 802 EYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD 837
           EYF    G R+GL D A++TA SGY+ RRLV+  QD
Sbjct: 761 EYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQD 796