Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1413 a.a., DNA-directed RNA polymerase subunit beta' from Phaeobacter inhibens DSM 17395

 Score =  234 bits (598), Expect = 2e-65
 Identities = 234/868 (26%), Positives = 385/868 (44%), Gaps = 117/868 (13%)

Query: 7   PKEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------ 58
           PK   +I   L SPE+I + S  +I   +T +   + P   GL   R+ G I        
Sbjct: 16  PKVFDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCG 75

Query: 59  --------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGK 107
                   G+VC+ C   V          GHIEL+ PV HI F K +   +  +      
Sbjct: 76  KYKRMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLKSLPSRIGLMLD---- 131

Query: 108 VTITEIKRDEYLEKMAKLEEDGGD----PWTLCDDLLKEAAKGSVCPSCGEVKADVKYDK 163
           +T+ +++R  Y E    +E    D         ++ +    +  +      + A+   + 
Sbjct: 132 MTLRDLERVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDQFGMDAFTANIGAEAIREM 191

Query: 164 PTAYHQLDGKAQKQLTSSEVREILEKI-PAEDCKLLGINAKVA----RPEFMVLTVLPVP 218
             A   +D +A+ +   +E+ E   ++ P +  K L +         RPE+MV+TV+PV 
Sbjct: 192 LAA---IDLEAEAEHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWMVMTVIPVI 248

Query: 219 PVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINT 278
           P  +RP + L+ G  +  DL      +I  N RL+  I   AP++I+ +   +LQ  ++ 
Sbjct: 249 PPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRMLQESVDA 308

Query: 279 YFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSIN 338
            FDN   G       + RPL++L+  LKGK+GRFR NL GKRV+FS R+VI   P L ++
Sbjct: 309 LFDNGRRG-RVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLH 367

Query: 339 EVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIK 398
           + G+PK +A EL       P+   ++ A          G++  VK+ +    KE      
Sbjct: 368 QCGLPKKMALEL-----FKPFIYSRLEA---------KGLSSTVKQAKKLVEKERP---- 409

Query: 399 ITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLC 458
                 ++W  +I D ++ E        V+ NR P+LHR+ I A +  ++  +  + +  
Sbjct: 410 ------EVW--DILDEVIREHP------VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPL 455

Query: 459 VCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYV 518
           VC  +NADFDGD+M VHVP S EA+ EA  LM+   +++SP  G PII    D I G Y 
Sbjct: 456 VCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYY 515

Query: 519 LTSSLFTKDEALTLLKSSGLNVE---LGEPDVIENNIEYYSGK-SLFSKTLPEGLSLQYR 574
           +T            L+  G+  E    G  D +++ ++  +G+  L +K       +   
Sbjct: 516 VT------------LEREGMPGEGKIFGTIDEVQHALD--AGEVHLHTKITARITQIDEE 561

Query: 575 AKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGIVLNTLVKDFGSEDARL 634
                K    T       A ++ +N K    ++++     E   V++T+ +  G +++ +
Sbjct: 562 GNEVLKRFETTPGRVRLGA-LLPKNVKAPFELVNRLLRKKEVQQVIDTVYRYCGQKESVI 620

Query: 635 FLDAATKMSIKAMVLKGFTTGIDDEDIPA---EAIQEIQDLLNKAEQDVED--IVEKYEN 689
           F D    M  +     G + G DD  IP      + E +D +   EQ   D  I +  + 
Sbjct: 621 FCDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRDQVKDFEQQYMDGLITQGEKY 680

Query: 690 GTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMARTGARGSLLNIT 749
             +     +  ++  +A +  I    R++AG V E      N   +MA +GARGS+  + 
Sbjct: 681 NKVVDAWSKCNDKVTDAMMGTISADKRNEAGAVME-----PNSVYMMAHSGARGSVTQMK 735

Query: 750 MMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCYKKGLAPTEYFFHAMG 809
            +    G  +   G +                        + S +K+GL   EYF    G
Sbjct: 736 QLGGMRGLMAKPNGDIIETP--------------------IISNFKEGLTVLEYFNSTHG 775

Query: 810 GREGLVDQAVRTAQSGYMQRRLVNALQD 837
            R+GL D A++TA SGY+ RRLV+  QD
Sbjct: 776 ARKGLSDTALKTANSGYLTRRLVDVAQD 803