Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1402 a.a., DNA-directed RNA polymerase, beta'' subunit, predominant form from Dechlorosoma suillum PS

 Score =  251 bits (640), Expect = 3e-70
 Identities = 243/895 (27%), Positives = 396/895 (44%), Gaps = 108/895 (12%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   IT  L SP++IR+ S  ++   +T +   + P   GL   ++ G I         
Sbjct: 15  EEFDAITISLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V          GHIEL+ P  HI F K +   L  V      +
Sbjct: 75  YKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPTAHIWFLKSLPSRLGMVLD----M 130

Query: 109 TITEIKRDEYLEKMAKLEE-----DGGDPWTLCDDLLKEAAKGS--VCPSCGEVKADVKY 161
           T+ +I+R  Y E    +E      + G   T  D L K    G   +     E   ++  
Sbjct: 131 TLRDIERVLYFEAYVVIEPGMTSLNRGQLLTEDDYLAKVEEYGDDFIALMGAEAVRELLR 190

Query: 162 DKPTAYHQLDGKAQKQLTSSEVREILEKIPAEDCKLL-GINAKVARPEFMVLTVLPVPPV 220
                +     +++ + T SE +    K  A+  K+L G      +P++M+L VLPV P 
Sbjct: 191 TLDLDHEVERLRSELETTGSEAKN---KKIAKRLKILEGFQKSGIKPDWMILEVLPVLPP 247

Query: 221 TVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYF 280
            +RP + L+ G  +  DL      +I  N RL+  +   AP +I+ +   +LQ  +++  
Sbjct: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQESVDSLL 307

Query: 281 DNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEV 340
           DN   G       + RPL++LA  +KGK GRFR NL GKRV++S R+VI   P+L +++ 
Sbjct: 308 DNGRRG-KAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQC 366

Query: 341 GIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKIT 400
           G+PKL+A EL       P+   K+  +         G+   +K+ +           K+ 
Sbjct: 367 GLPKLMALEL-----FKPFIFHKLELM---------GLATTIKQAK-----------KMV 401

Query: 401 DANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVC 460
           ++ + +  + + D  VI  H      V+ NR P+LHR+ I A +  ++  +  + +  VC
Sbjct: 402 ESQEPVVWDILED--VIREHP-----VMLNRAPTLHRLGIQAFEPTLIEGKAIQLHPLVC 454

Query: 461 PPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLT 520
             +NADFDGD+M VHVP S EA+ EA  LML   +++SP  G PII    D + G Y  T
Sbjct: 455 AAFNADFDGDQMAVHVPLSLEAQMEARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYAT 514

Query: 521 SSLFTKDEALTLLKSSGLN-VELGEPDVIENN--IEYYSGKSLFSKTLPEGLSLQYRAKI 577
                        K  G+N  ++ E     N+   + ++  S+  K    G S ++  KI
Sbjct: 515 RDRIN-------AKGEGMNFADVSEVLRAVNSGLADLHAKVSVRLKEYVRGESGEWVEKI 567

Query: 578 CKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGIVLNTLVKDFGSEDARLFLD 637
            +   TC +         ++  G L   VIDK     E   ++NT  +  G ++  +F D
Sbjct: 568 TRYNTTCGRAILSE----ILPKG-LPFSVIDKALKKKEISKLINTSFRRCGLKETVVFAD 622

Query: 638 AATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPG 697
              +         G +   DD  +P E       ++ +AE++V++I  +Y NG +     
Sbjct: 623 KLMQNGYALATRAGISFCSDDMRVPTEK----HTIIAEAEKEVKEIETQYTNGLV----- 673

Query: 698 RGVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQ 757
                 R   ++ I G+  DQ   V  + L  E       +T  + S  +I MMA S  +
Sbjct: 674 --TFGERYNKVVDIWGRTGDQVAKVMMEQLGHEEVVDRHGKTVKQESFNSIYMMADSGAR 731

Query: 758 QSVRGGRVFRGYRERTLPHFGKGSLDAKSHGF-----VRSCYKKGLAPTEYFFHAMGGRE 812
            S    R   G R           L AK  G      + + +++GL   +YF    G R+
Sbjct: 732 GSAAQIRQLAGMR----------GLMAKPDGSIIETPITTNFREGLNVLQYFISTHGARK 781

Query: 813 GLVDQAVRTAQSGYMQRRLVNALQDIRAEYDGTVRDSRGLVVQFEYGEDLVDPAK 867
           GL D A++TA SGY+ RRLV+  QD+    D     +   +     G ++++P +
Sbjct: 782 GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTQNGVTMKALIEGGEVIEPLR 836