Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' from Klebsiella michiganensis M5al

 Score =  228 bits (582), Expect = 2e-63
 Identities = 234/890 (26%), Positives = 370/890 (41%), Gaps = 156/890 (17%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           +E   I   L SP+ IR+ S  ++   +T +   + P   GL   R+ G +         
Sbjct: 15  EEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGK 74

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V          GHIEL+ P  HI F K +   +  +      +
Sbjct: 75  YKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLPSRIGLLLD----M 130

Query: 109 TITEIKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGEVKADVKYDKPTAYH 168
            + +I+R  Y E    +E  GG        +L E          G+ + D K        
Sbjct: 131 PLRDIERVLYFESYVVIE--GGMTNLERQQILTEEQYLDALEEFGD-EFDAKMGAEAIQA 187

Query: 169 QLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVA--------RPEFMVLTVLPVPPV 220
            L     +Q   +   E+ E       K L    K+         +PE+M+LTVLPV P 
Sbjct: 188 LLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILTVLPVLPP 247

Query: 221 TVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINTYF 280
            +RP + L+ G  +  DL      +I  N RL+  ++  AP++I+ +   +LQ  ++   
Sbjct: 248 DLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQEAVDALL 307

Query: 281 DNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSINEV 340
           DN   G       + RPL++LA  +KGK+GRFR NL GKRV++S R+VI+  P L +++ 
Sbjct: 308 DNGRRG-RAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQC 366

Query: 341 GIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIKIT 400
           G+PK +A EL  P                 G     G+   +K  +    +EE     I 
Sbjct: 367 GLPKKMALELFKP--------------FIYGKLELRGLATTIKAAKKMVEREEAVVWDIL 412

Query: 401 DANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVC 460
           D              VI  H      VL NR P+LHR+ I A +  ++  +  + +  VC
Sbjct: 413 DE-------------VIREHP-----VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC 454

Query: 461 PPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYVLT 520
             YNADFDGD+M VHVP + EA+ EA  LM+   +I+SP  G PII    D + G Y +T
Sbjct: 455 AAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMT 514

Query: 521 -SSLFTKDEALTL--------LKSSGL-------NVELGEPDVIENNIEYYSGKSLFSKT 564
              +  K E + L        +  +GL        V + E +  EN  E+ +  SL   T
Sbjct: 515 RDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKVRITEYEKDENG-EFVAKTSLKDTT 573

Query: 565 LPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEA-GIVLNTL 623
           +   +                        ++++  G  L   I     G +A   +LNT 
Sbjct: 574 VGRAI-----------------------LWMIVPKG--LPFSIVNQALGKKAISKMLNTC 608

Query: 624 VKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDI 683
            +  G +   +F D             G + GIDD  IP    ++  +++++AE +V +I
Sbjct: 609 YRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIP----EKKYEIISEAEAEVAEI 664

Query: 684 VEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE------------- 730
            E++++G + +         R   ++ I   A D+        L  E             
Sbjct: 665 QEQFQSGLVTA-------GERYNKVIDIWAAANDRVSKAMMDNLQTETVINRNGEEEQQV 717

Query: 731 --NHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHG 788
             N   +MA +GARGS   I  +A   G  +   G +                       
Sbjct: 718 SFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETP------------------- 758

Query: 789 FVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDI 838
            + + +++GL   +YF    G R+GL D A++TA SGY+ RRLV+  QD+
Sbjct: 759 -ITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDL 807