Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1385 a.a., DNA-directed RNA polymerase, beta prime subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  225 bits (573), Expect = 2e-62
 Identities = 223/838 (26%), Positives = 369/838 (44%), Gaps = 162/838 (19%)

Query: 59  GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAK---------------DIYKIL-- 98
           G+VC+ C   V          GHIEL+ PV HI F K               D+ K+L  
Sbjct: 87  GIVCEKCGVEVIASKVRRERMGHIELAAPVAHIWFLKTLPSKIGTLLDMTMADLEKVLYF 146

Query: 99  -KAVCPHCGKVTITE---IKRDEYLEKMAKLEEDGGDPWTLCDDLLKEAAKGSVCPSCGE 154
              +    G   +T+   I  D+YL+ +    ED                 G    +   
Sbjct: 147 DSYIVLDPGSTNLTKMQVISEDQYLQVIDHYGEDA-------------LTVGMGAEAVRS 193

Query: 155 VKADVKYDKPTAYHQLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVARPEFMVLTV 214
           +  ++  ++     QL  ++Q   + ++ +++ +++   +  L   N    +PE+MV+ V
Sbjct: 194 LLEELNLEELRV--QLREESQATKSQTKKKKLTKRLKIVEAFLESNN----KPEWMVMEV 247

Query: 215 LPVPPVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQY 274
           +PV P  +RP + L+ G  +  DL      +I  N RL+  +  GAP++II +   +LQ 
Sbjct: 248 IPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELGAPDIIIRNEKRMLQE 307

Query: 275 HINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPR 334
            ++  FDN   G       +GRPL++L+  +KGK+GRFR NL GKRV++S R+VI   P+
Sbjct: 308 AVDALFDNGRRG-RAITGTNGRPLKSLSDMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPK 366

Query: 335 LSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEE 394
           L +++ G+PK +A EL  P   +   +EK             G+   +K  +    +EE 
Sbjct: 367 LKLHQCGLPKKMALELFKPFIYS--ELEK------------RGLASTIKSAKKMVEREE- 411

Query: 395 YKIKITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFR 454
                      + V +I + +V E        ++ NR P+LHR+ I + +  ++  +  +
Sbjct: 412 -----------LVVWDILEEVVREYP------IMLNRAPTLHRLGIQSFEPLLVEGKAIQ 454

Query: 455 HNLCVCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFIS 514
            +  VC  YNADFDGD+M VHVP S EA+ E   LM+   +I+SP  G P+I    D + 
Sbjct: 455 LHPLVCSAYNADFDGDQMAVHVPLSVEAQIECRVLMMSTNNILSPANGSPVIVPSQDIVL 514

Query: 515 GAYVLT-SSLFTKDEALT---------------LLKSSGLNVELGEPDVIENNIEYYSGK 558
           G Y +T    F K E ++               +   + +NV + +  V+   +    G+
Sbjct: 515 GLYYMTVDRSFEKGENMSFCAPWEVVAAYDAGVVALHARINVRMEDGKVVRTTV----GR 570

Query: 559 SLFSKTLPEGLSLQYRAKICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGI 618
            L  + LP      +         T TK+          R+             G++A +
Sbjct: 571 ILVWELLP------HCVPFSMVNTTLTKKNIARLVSTAYRDA------------GTKATV 612

Query: 619 VLNTLVKDFGSEDARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQ 678
           +L   +KD G E A                  G T  + D  IP+      + L+  A+ 
Sbjct: 613 ILCDRLKDVGYEYA---------------TRAGVTIAVKDLTIPSTK----KGLIETAQN 653

Query: 679 DVEDIVEKYENGTLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMAR 738
           +V+DI  +Y +G +           +   ++ +  KA     N   + +S +       R
Sbjct: 654 EVDDIERQYRDGII-------TRTEKYNKVVDVWTKATQDVSNEMIREISSD--IVEDPR 704

Query: 739 TGAR---GSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGF-----V 790
           TGA+    S  +I MM+ S            RG +++     G   L AK  G      +
Sbjct: 705 TGAKEANSSFNSIYMMSTSGA----------RGNQDQMRQLAGMRGLMAKPSGEIIETPI 754

Query: 791 RSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD-IRAEYD-GTV 846
            S +++GL+  +YF    G R+GL D A++TA SGY+ RRLV+ +QD I +E+D GTV
Sbjct: 755 TSSFREGLSVLQYFTSTHGARKGLADTALKTANSGYLTRRLVDVVQDVIVSEHDCGTV 812