Pairwise Alignments

Query, 889 a.a., DNA-directed RNA polymerase subunit A' from Methanococcus maripaludis S2

Subject, 1415 a.a., DNA-directed RNA polymerase, beta' subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  237 bits (605), Expect = 3e-66
 Identities = 252/928 (27%), Positives = 404/928 (43%), Gaps = 157/928 (16%)

Query: 8   KEIGDITFGLLSPEQIRTMSVAKIVTADTYDDDGY-PIDGGLMDTRL-GVIDP------- 58
           K   +I   L SPE+I + S  +I   +T +   + P   GL   R+ G I         
Sbjct: 17  KTFDEIKVSLASPERILSWSFGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGK 76

Query: 59  -------GLVCKSCSGRVGTCP---GHFGHIELSKPVVHIGFAKDIYKILKAVCPHCGKV 108
                  G++C+ C   V          GHIEL+ PV HI F K +   +  +      +
Sbjct: 77  YKRMKYRGVICEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLKSLPSRIGTMLD----M 132

Query: 109 TITEIKRDEYLEKMAKLEED-----GGDPWTLCDDLLKEAAKGSVCPSCGEVKADVK--- 160
           T+ +++R  Y E    +E        G   T  + L  + A G    +       ++   
Sbjct: 133 TLRDLERILYFENYVVIEPGLTDLTYGQLMTEEEFLDAQDAYGMDAFTANIGAEAIREML 192

Query: 161 --YDKPTAYHQLDGKAQKQLTSSEVREILEKIPAEDCKLLGINAKVARPEFMVLTVLPVP 218
              D  T   QL     +     + ++I++++   +  L   N    RPE+MVLTV+PV 
Sbjct: 193 AAIDLETEAEQLRADLAEATGELKPKKIIKRLKLVENFLESGN----RPEWMVLTVVPVI 248

Query: 219 PVTVRPSITLESGERSEDDLTHKLVDIIRINQRLEENINGGAPNLIIEDLWDLLQYHINT 278
           P  +RP + L+ G  +  DL      +I  N RL+  I   AP++II +   +LQ  ++ 
Sbjct: 249 PPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQESVDA 308

Query: 279 YFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNFSARTVISPDPRLSIN 338
            FDN   G       + RPL++L+  LKGK+GRFR NL GKRV+FS R+VI   P L ++
Sbjct: 309 LFDNGRRG-RVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLH 367

Query: 339 EVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGVNYVVKKVRTKDGKEEEYKIK 398
           + G+PK +A EL       P+   ++ A          G++  VK+ +    KE      
Sbjct: 368 QCGLPKKMALEL-----FKPFIYSRLEA---------KGLSSTVKQAKKLVEKERP---- 409

Query: 399 ITDANKDMWVENITDGMVIERHLSDGDIVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLC 458
                 ++W  +I D ++ E        V+ NR P+LHR+ I A +  ++  +  + +  
Sbjct: 410 ------EVW--DILDEVIREHP------VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPL 455

Query: 459 VCPPYNADFDGDEMNVHVPQSEEARAEAEKLMLVEKHIVSPRFGGPIIGAIHDFISGAYV 518
           VC  +NADFDGD+M VHVP S EA+ EA  LM+   +++SP  G PII    D I G Y 
Sbjct: 456 VCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPANGAPIIVPSQDMILGLYY 515

Query: 519 LTSSLFTKDEALTLLKSSGLNVELGEPDVIENNIEYYSGKSLFSKTLPEGLSLQYRAK-- 576
           +T     + E L      G  +  G P+ +E+        +L + T+     +Q R K  
Sbjct: 516 IT----LEREGL-----PGQGMIFGSPEEVEH--------ALTAGTVHLHSKIQARVKQI 558

Query: 577 ------ICKKCDTCTKEECEHDAYVVIRNGKLLRGVIDKNGFGSEAGIVLNTLVKDFGSE 630
                 I K+ +T T       A + + N K    ++++     E   V++T+ +  G +
Sbjct: 559 DDEGNEIYKRYET-TPGRVRLGALLPL-NAKAPFELVNRLLRKKEVQQVIDTVYRYCGQK 616

Query: 631 DARLFLDAATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYENG 690
           ++ +F D    +  +     G + G DD  IP        D      + V D V+++E  
Sbjct: 617 ESVIFCDQIMTLGFREAFKAGISFGKDDMLIP--------DTKWDIVEGVRDQVKEFEQQ 668

Query: 691 TLESLPGRGVEESREAYIMQILGKARDQAGNVAEKYLSKE------------NHAALMAR 738
            ++ L  +G + ++   ++    K  D+  +     +S++            N   +MA 
Sbjct: 669 YMDGLITQGEKYNK---VVDAWSKCSDEVASEMMDEISRDRFDPDTKEQMEPNSVYMMAH 725

Query: 739 TGARGSLLNITMMAASVGQQSVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVRSCYKKGL 798
           +GARGS   +  +    G  +   G +                        + S +K+GL
Sbjct: 726 SGARGSPAQMKQLGGMRGLMAKPSGEIIETP--------------------IISNFKEGL 765

Query: 799 APTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQD-------------IRAE---Y 842
              EYF    G R+GL D A++TA SGY+ RRLV+  QD             I AE    
Sbjct: 766 TVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIVRLNDCGTENAITAEAAVN 825

Query: 843 DGTVRDSRG-LVVQFEYGEDLVDPAKAD 869
           DG V  S G  V+     ED+VDPA  +
Sbjct: 826 DGEVVASLGERVLGRVAAEDVVDPASGE 853