Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1356 a.a., DNA-directed RNA polymerase, beta subunit from Pseudomonas stutzeri RCH2

 Score =  127 bits (319), Expect = 3e-33
 Identities = 91/298 (30%), Positives = 138/298 (46%), Gaps = 74/298 (24%)

Query: 361  GDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEM------- 413
            GDK A RHG KGV+ +I+P ED+P+  +G   D+++NP  +PSRM +GQ+LE        
Sbjct: 1079 GDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDIVLNPLGVPSRMNVGQILETHLGLAAK 1138

Query: 414  -----------------------------IGGKVGSLE-------------CRR---IDG 428
                                         IGG+  SL+              R+   +  
Sbjct: 1139 GLGEKINLMLEEQRKVAELRKFLHEIYNEIGGRQESLDDLSDQEVLDLANNLRKGVPMAT 1198

Query: 429  TIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFVGVAYYQKLHHLVAGKIH 488
             +F G  E +++  L+        +  ++DG++G K E    VG  Y  KL+HLV  K+H
Sbjct: 1199 PVFDGAKEREIKAMLKLADLPESGQMQLFDGRTGNKFERTTTVGYMYMLKLNHLVDDKMH 1258

Query: 489  ARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVCA 548
            ARS G   ++T+QP  G+A+ GG RFGEME   L A+GAA  L+E L  +SD        
Sbjct: 1259 ARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN----- 1313

Query: 549  KCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLE 606
              G   ++               ++I D        +  +F +L+ E++S+GID  LE
Sbjct: 1314 --GRTKMY---------------KNIVDGDHRMEAGMPESFNVLIKEIRSLGIDIDLE 1354



 Score = 42.7 bits (99), Expect = 1e-07
 Identities = 34/141 (24%), Positives = 64/141 (45%), Gaps = 20/141 (14%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYP-GGQLDKFEVPE 262
           GQN  VA M + GYN ED+ ++++  ++     +   +      +    G +    ++P 
Sbjct: 801 GQNMRVAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQELTCVSRDTKLGPEEITADIPN 860

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQEITLQTK------- 315
            G      E A   L + G++ + + V  GD+++GK +P     E ++T + K       
Sbjct: 861 VG------EAALNKLDEAGIVYVGAEVGPGDILVGKVTPK---GETQLTPEEKLLRAIFG 911

Query: 316 ---SQRRDTSVTIRHGEEGIV 333
              S  +DTS+ +  G +G V
Sbjct: 912 EKASDVKDTSLRVPTGTKGTV 932