Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score =  128 bits (322), Expect = 1e-33
 Identities = 94/299 (31%), Positives = 138/299 (46%), Gaps = 75/299 (25%)

Query: 361  GDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEM------- 413
            GDK A RHG KGVI  I P ED+PY E+G   D+++NP  +PSRM IGQ+LE+       
Sbjct: 1063 GDKMAGRHGNKGVISKINPVEDMPYDENGQPVDIVLNPLGVPSRMNIGQILEVHLGLAAK 1122

Query: 414  -IGGKVGSL----------------------ECRRIDGT--------------------- 429
             IG K+  +                        +R+D +                     
Sbjct: 1123 GIGDKINQMIKEQQELAKLREFLQKVYDLGDTRQRVDISELSDEDVRTLAHNLRAGLPVA 1182

Query: 430  --IFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFVGVAYYQKLHHLVAGKI 487
              +F G  E  ++  LE        +  ++DG++G   E  + VG  Y  KL+HLV  K+
Sbjct: 1183 TPVFDGAPESSIKAMLELADLPASGQLTLFDGRTGDAFERPVTVGYMYMLKLNHLVDDKM 1242

Query: 488  HARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKERLLDESDPHEDYVC 547
            HARS G   ++T+QP  G+A+ GG RFGEME   L A+GAA  L+E L  +SD       
Sbjct: 1243 HARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN---- 1298

Query: 548  AKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFKLLLDELKSMGIDPKLE 606
               G   ++               ++I D        +  +F +LL E++S+GI+ +LE
Sbjct: 1299 ---GRTKMY---------------KNIVDGNHAMEPGMPESFNVLLKEIRSLGINIELE 1339



 Score = 44.7 bits (104), Expect = 3e-08
 Identities = 35/153 (22%), Positives = 72/153 (47%), Gaps = 23/153 (15%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYP-GGQLDKFEVPE 262
           GQN  +A M + GYN ED+ ++++  ++     +   +      +    G +    ++P 
Sbjct: 797 GQNMRIAFMPWNGYNFEDSILVSERVVQDDRFTTIHIQELSCVARDTKLGAEEITADIPN 856

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQEITLQTK------- 315
            G      E A   L + G++ + + VK GD+++GK +P     E ++T + K       
Sbjct: 857 VG------EAALSKLDESGIVYIGAEVKGGDILVGKVTPK---GETQLTPEEKLLRAIFG 907

Query: 316 ---SQRRDTSVTIRHGEEG-IVDLVILSETKEG 344
              S  +DTS+ + +   G ++D+ +   T++G
Sbjct: 908 EKASDVKDTSLRVPNSVAGTVIDVQVF--TRDG 938



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 39/177 (22%), Positives = 66/177 (37%), Gaps = 35/177 (19%)

Query: 19  DPETLVKNLRENRRSGKLSPS--TSISFNEESNDVHISTDGGRAVRPLIVVENGASKVTE 76
           D    +  +   RR   L P   T      E  DVH++  G   + P+   E     +  
Sbjct: 516 DQNNPLSEVTHKRRISALGPGGLTRERAGFEVRDVHVTHYG--RLCPIETPEGPNIGLIN 573

Query: 77  EILEKMESKELTFLD-----LVNSGI---IEYLDAEEEENARIAMYEDEITEEN------ 122
            +       E  FL+     +VN  +   ++YL A EE    IA    ++TEE       
Sbjct: 574 SLSAFARCNEYGFLETPYRRVVNGVVTDEVDYLSAIEEGQFVIAQANAKLTEEGGFADEL 633

Query: 123 -----------------THVEIDPLVILGIGAGVAPYPEHNSAPRITMAAAMSKQSL 162
                             ++++    ++ I A + P+ EH+ A R  M A M +Q++
Sbjct: 634 VTARQKGESGLHPREHVDYMDVATNQVVSIAASLIPFLEHDDANRALMGANMQRQAV 690