Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1102 a.a., DNA-directed RNA polymerase subunit beta from Synechocystis sp000284455 PCC 6803

 Score =  196 bits (497), Expect = 6e-54
 Identities = 144/432 (33%), Positives = 218/432 (50%), Gaps = 64/432 (14%)

Query: 204  GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLD-KFEVPE 262
            GQN +VA M +EGYN EDA +I++  +   +  S     +E   ++   G  +   E+P 
Sbjct: 653  GQNILVAYMPWEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPN 712

Query: 263  KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEE-------QEITLQTK 315
             G      E+A RNL + G+I + + V+SGD+++GK +P    ++       + I  +  
Sbjct: 713  VG------EDALRNLDEHGIIRIGAWVESGDILVGKVTPKGEADQPPEEKLLRAIFGEKA 766

Query: 316  SQRRDTSVTIRHGEEG-IVDLVILSETKE------GNRLGKVRVRDLRIPEFGDKFASRH 368
               RD S+ + +GE+G +VD+ + +  K        N + ++ V   R  + GDK A RH
Sbjct: 767  RDVRDNSLRVPNGEKGRVVDVRVFTREKGDELPPGANMVVRIYVAQKRKIQVGDKMAGRH 826

Query: 369  GQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECRRIDG 428
            G KG+I  I+P ED+PY  DG   D+ +NP  +PSRM +GQV E + G  G     R   
Sbjct: 827  GNKGIISRILPIEDMPYLPDGRPIDIALNPLGVPSRMNVGQVFECLLGWAGENLGVRFKI 886

Query: 429  TIFS---GESEWK------LREGLEK------YGFEHHAKEAMYDGKSGRKLECDIFVGV 473
            T F    GE   +      L E  ++      +   H  K  ++DG++G   +  I VG 
Sbjct: 887  TPFDEMYGEEASRDTVHGLLEEASQRPNKDWVFNENHPGKIQVFDGRTGEPFDRPITVGQ 946

Query: 474  AYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKE 533
            AY  KL HLV  KIHARS GP  ++T+QP  G+A++GG RFGEME   L A+GAA +L+E
Sbjct: 947  AYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQE 1006

Query: 534  RLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESE---DIQDNRKIPPVKIAYAFK 590
             L  +SD  +                         G +E    I   + IP      +FK
Sbjct: 1007 LLTVKSDDMQ-------------------------GRNEALNAIVKGKSIPRPGTPESFK 1041

Query: 591  LLLDELKSMGID 602
            +L+ EL+S+G+D
Sbjct: 1042 VLMRELQSLGLD 1053



 Score = 34.3 bits (77), Expect = 3e-05
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 23/86 (26%)

Query: 100 YLDAEEEENARIA-------------------MYEDEIT----EENTHVEIDPLVILGIG 136
           YL A+EE++ R+A                    Y  E +    E+  +V + P+ I+ + 
Sbjct: 461 YLTADEEDDMRVAPGDIPTDEEGNIIGESVPIRYRQEFSTTSPEQVDYVAVSPVQIISVA 520

Query: 137 AGVAPYPEHNSAPRITMAAAMSKQSL 162
             + P+ EH+ A R  M + M +Q++
Sbjct: 521 TSMIPFLEHDDANRALMGSNMQRQAV 546