Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1100 a.a., DNA-directed RNA polymerase subunit beta from Synechococcus elongatus PCC 7942

 Score =  194 bits (494), Expect = 1e-53
 Identities = 133/367 (36%), Positives = 198/367 (53%), Gaps = 36/367 (9%)

Query: 204  GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLD-KFEVPE 262
            GQN +VA M +EGYN EDA +I++  +   +  S     +E   ++   G  +   E+P 
Sbjct: 653  GQNILVAYMPWEGYNYEDAILISERLVYDDVYTSIHIEKFEIEARQTKLGPEEITREIPN 712

Query: 263  KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEE-------QEITLQTK 315
             G      E+A R L ++G+I + + V+SGD+++GK +P    ++       + I  +  
Sbjct: 713  VG------EDALRQLDENGIIRVGAWVESGDILVGKVTPKGESDQPPEEKLLRAIFGEKA 766

Query: 316  SQRRDTSVTIRHGEEGIVDLVILSETKEGNRLG-------KVRVRDLRIPEFGDKFASRH 368
               RD S+ + +GE+G V  V L   ++G+ L        +V V   R  + GDK A RH
Sbjct: 767  RDVRDNSLRVPNGEKGRVVDVRLFTREQGDELPPGANMVVRVYVAQKRKIQVGDKMAGRH 826

Query: 369  GQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRMTIGQVLEMIGGKVGSLECRRIDG 428
            G KG+I  I+P ED+PY  DG   D+++NP  +PSRM +GQV E + G  G L   R   
Sbjct: 827  GNKGIISRILPCEDMPYLPDGTPLDIVLNPLGVPSRMNVGQVFECMLGWAGQLLDARFKV 886

Query: 429  T----IFSGESEW-----KLREGLEKYGF------EHHAKEAMYDGKSGRKLECDIFVGV 473
            T    ++  E+       KL E  E+ G       +   K  +YDG++G   +  + VG 
Sbjct: 887  TPFDEMYGAEASRLTVNAKLSEAREQTGQPWVFSDDEPGKIQVYDGRTGEPFDRPVTVGR 946

Query: 474  AYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKE 533
            AY  KL HLV  KIHARS GP  ++T+QP  G+A++GG RFGEME   L A+GAA +L+E
Sbjct: 947  AYMLKLVHLVDDKIHARSTGPYSLVTQQPLGGKAQQGGQRFGEMEVWALEAYGAAYILQE 1006

Query: 534  RLLDESD 540
             L  +SD
Sbjct: 1007 LLTVKSD 1013