Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1380 a.a., DNA-directed RNA polymerase subunit beta from Sinorhizobium meliloti 1021

 Score =  140 bits (352), Expect = 5e-37
 Identities = 90/249 (36%), Positives = 126/249 (50%), Gaps = 54/249 (21%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            ++ KV V   R  + GDK A RHG KGV+  IVP ED+P+ EDG   D+++NP  +PSRM
Sbjct: 1070 KMVKVFVAVKRKIQPGDKMAGRHGNKGVVSRIVPIEDMPFLEDGTHVDVVLNPLGVPSRM 1129

Query: 406  TIGQVLEM--------IGGKVGSL------------------------------------ 421
             +GQ+LE         +G K+G++                                    
Sbjct: 1130 NVGQILETHLGWACAGMGKKIGAMLDAYKAGADIQPLRDTIDSVIGSGPKGEPIKQYDDE 1189

Query: 422  -------ECRR---IDGTIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFV 471
                   + RR   I   +F G  E  + E LE+ G +   +  +YDG++G   +  + V
Sbjct: 1190 SIVRLAEQTRRGVSIATPVFDGAVEADVNEMLEQAGLKVTGQSTLYDGRTGETFDRQVTV 1249

Query: 472  GVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLL 531
            G  Y  KL+HLV  KIHARS GP  ++T+QP  G+A+ GG RFGEME   L A+GAA  L
Sbjct: 1250 GYIYMLKLNHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1309

Query: 532  KERLLDESD 540
            +E L  +SD
Sbjct: 1310 QEMLTVKSD 1318



 Score = 50.8 bits (120), Expect = 4e-10
 Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 16/139 (11%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLDKFEVPEK 263
           G+N +VA M + GYN ED+ ++++  +   +  S     +E   +    G       PE+
Sbjct: 806 GRNALVAFMPWNGYNYEDSILLSERIVRDDVFTSIHIEEFEVMARDTKLG-------PEE 858

Query: 264 GVRGYR--AEEAYRNLGDDGLIDLESSVKSGDVILGKTSP----PRFLEE---QEITLQT 314
             R     +EEA +NL + G++ + + V+ GD+++GK +P    P   EE   + I  + 
Sbjct: 859 ITRDIPNVSEEALKNLDEAGIVYIGAEVQPGDILVGKITPKGESPMTPEEKLLRAIFGEK 918

Query: 315 KSQRRDTSVTIRHGEEGIV 333
            S  RDTS+ +  G  G V
Sbjct: 919 ASDVRDTSMRMPPGTFGTV 937