Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1393 a.a., DNA-directed RNA polymerase, beta subunit (NCBI) from Rhodospirillum rubrum S1H

 Score =  138 bits (347), Expect = 2e-36
 Identities = 100/315 (31%), Positives = 145/315 (46%), Gaps = 77/315 (24%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            ++ KV V   R  + GDK A RHG KGVI  I P ED+PY EDG   D+++NP  +PSRM
Sbjct: 1096 KMVKVFVAVKRKLQPGDKMAGRHGNKGVISKINPIEDMPYLEDGTYVDIVLNPLGVPSRM 1155

Query: 406  TIGQVLEM--------IGGKVGSL--ECRR------------------------------ 425
             +GQ+LE         +G ++G+L  + +R                              
Sbjct: 1156 NVGQILETHLGWACRGLGAQIGALLEQVKRGLIPINDLREKLDDVYGPRHAKEDLAPMGD 1215

Query: 426  ---------------IDGTIFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIF 470
                           I   +F G  E  + + L K G +   +  + DG++G   +  + 
Sbjct: 1216 DQIKELAFNLRSGVPIATPVFDGARESDIVDMLRKAGLDSSGQVTLSDGRTGEPFDRKVT 1275

Query: 471  VGVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAML 530
            VG  Y  KLHHLV  KIHARS GP  ++T+QP  G+A+ GG RFGEME   L A+GAA  
Sbjct: 1276 VGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYT 1335

Query: 531  LKERLLDESDPHEDYVCAKCGEIAIFDYKRGMKFCPVCGESEDIQDNRKIPPVKIAYAFK 590
            L+E L  +SD                D     K      + +D  +        I  +F 
Sbjct: 1336 LQEMLTVKSD----------------DVSGRTKVYEAIVKGDDTFE------AGIPESFN 1373

Query: 591  LLLDELKSMGIDPKL 605
            +L+ E++S+G+D +L
Sbjct: 1374 VLVKEMRSLGLDVEL 1388



 Score = 57.8 bits (138), Expect = 3e-12
 Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 14/138 (10%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLD-KFEVPE 262
           G+N +VA M + GYN ED+ +I++  +   +  S     +E   +    GQ +   ++P 
Sbjct: 832 GRNVLVAFMPWNGYNFEDSILISERIVSDDVFTSIHIEEFEVMARDTKLGQEEITRDIPN 891

Query: 263 KGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSP----PRFLEE---QEITLQTK 315
            G      EEA +NL + G++ + + V++GD+++GK +P    P   EE   + I  +  
Sbjct: 892 VG------EEALKNLDEAGIVYIGAEVQAGDILVGKVTPKGESPMTPEEKLLRAIFGEKA 945

Query: 316 SQRRDTSVTIRHGEEGIV 333
           S  RDTS+ I  G  G V
Sbjct: 946 SDVRDTSLRIPPGVTGTV 963