Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1378 a.a., DNA-directed RNA polymerase subunit beta from Phaeobacter inhibens DSM 17395

 Score =  117 bits (293), Expect = 3e-30
 Identities = 88/249 (35%), Positives = 119/249 (47%), Gaps = 54/249 (21%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            ++ KV +   R  + GDK A RHG KGVI  +VP ED+P+  DG   D  +NP  +PSRM
Sbjct: 1080 KMVKVFIAVKRKLQPGDKMAGRHGNKGVISKVVPMEDMPFLADGTPVDFCLNPLGVPSRM 1139

Query: 406  TIGQVLEM--------IGGKV-GSLECRRIDGTIFSGESEWKLREGLEKYG------FEH 450
             +GQ+LE         +G K+  +L+  R  G +           G + YG       E 
Sbjct: 1140 NVGQILETHMGWAARGLGIKIDDALQDYRRSGDLTPVREAMHHAYGDDVYGEGIADMTET 1199

Query: 451  HAKEA-------------MYDG----------------KSGRKLECD----------IFV 471
               EA             ++DG                 SG+ +  D          + V
Sbjct: 1200 DLVEAAGNVTRGVPIATPVFDGAKEADVNDSLVRAGFDTSGQSILFDGRTGEQFARPVTV 1259

Query: 472  GVAYYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLL 531
            G+ Y  KLHHLV  KIHARS GP  ++T+QP  G+A+ GG RFGEME   L A+GAA  L
Sbjct: 1260 GIKYLLKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL 1319

Query: 532  KERLLDESD 540
            +E L  +SD
Sbjct: 1320 QEMLTVKSD 1328



 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 47/143 (32%), Positives = 72/143 (50%), Gaps = 24/143 (16%)

Query: 204 GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSY--ESFEKRYPGGQLDKFEV- 260
           G+N VVA M + GYN ED+ +I++      + R   F S   E FE      +L   E+ 
Sbjct: 816 GKNVVVAFMPWNGYNYEDSILISER-----IARDDVFTSIHIEEFEVAARDTKLGPEEIT 870

Query: 261 ---PEKGVRGYRAEEAYRNLGDDGLIDLESSVKSGDVILGKTSP----PRFLEE---QEI 310
              P  G      EEA RNL + G++ + + V+ GD+++GK +P    P   EE   + I
Sbjct: 871 RDIPNVG------EEALRNLDEAGIVYIGADVEPGDILVGKITPKGESPMTPEEKLLRAI 924

Query: 311 TLQTKSQRRDTSVTIRHGEEGIV 333
             +  S  RDTS+ ++ G+ G V
Sbjct: 925 FGEKASDVRDTSLRVKPGDYGTV 947