Pairwise Alignments

Query, 611 a.a., DNA-directed RNA polymerase subunit B from Methanococcus maripaludis S2

Subject, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS

 Score =  139 bits (349), Expect = 1e-36
 Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 51/246 (20%)

Query: 346  RLGKVRVRDLRIPEFGDKFASRHGQKGVIGLIVPQEDLPYTEDGVIPDLIINPHAIPSRM 405
            ++ KV V   R  + GDK A RHG KGV+  IVP ED+PY  DG   D+++NP  +PSRM
Sbjct: 1136 KMVKVYVAVKRRLQPGDKMAGRHGNKGVVSRIVPVEDMPYMADGRPVDIVLNPLGVPSRM 1195

Query: 406  TIGQVLEM--------IGGKVGSL---------------------------------ECR 424
             +GQ+LE+        +G K+G +                                 E  
Sbjct: 1196 NVGQILEVHLGWAAKGLGYKIGDMLQAGAKAAEVRKFLEEIYNSEGKKENLNELNDQEIM 1255

Query: 425  RIDGT----------IFSGESEWKLREGLEKYGFEHHAKEAMYDGKSGRKLECDIFVGVA 474
             + G           +F G  E +++  L   G     +  ++DG++G   E  + VG  
Sbjct: 1256 ELAGNLTTGVPFATPVFDGADEAEIKAMLRLAGMPESGQITLHDGRTGDAFERQVTVGYM 1315

Query: 475  YYQKLHHLVAGKIHARSRGPIQVLTRQPTEGRAREGGLRFGEMERDVLVAHGAAMLLKER 534
            +Y KLHHLV  K+HARS GP  ++T+QP  G+A+ GG RFGEME   L A+GA+ +L+E 
Sbjct: 1316 HYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEM 1375

Query: 535  LLDESD 540
            L  +SD
Sbjct: 1376 LTVKSD 1381



 Score = 45.8 bits (107), Expect = 1e-08
 Identities = 41/162 (25%), Positives = 75/162 (46%), Gaps = 41/162 (25%)

Query: 204  GQNFVVAVMSYEGYNMEDAFIINKASLERGLGRSSFFRSYESFEKRYPGGQLDKFEV--- 260
            GQN ++A M + GYN ED+ +I++  +                E RY    +++  V   
Sbjct: 872  GQNMLIAFMPWNGYNFEDSILISERVVA---------------EDRYTSIHIEELTVVAR 916

Query: 261  -----PEKGVRGYRA--EEAYRNLGDDGLIDLESSVKSGDVILGKTSPPRFLEEQEITLQ 313
                 PE+  R   +  E     L + G++ + + V++GDV++GK +P     E ++T +
Sbjct: 917  DTKLGPEEITRDIASLGEVQLSRLDESGVVYIGAEVEAGDVLVGKVTPK---GETQLTPE 973

Query: 314  TK----------SQRRDTSVTIRHGEEG-IVDLVILSETKEG 344
             K          S  +DTS+ +  G  G ++D+ +   T+EG
Sbjct: 974  EKLLRAIFGEKASDVKDTSLRVPSGIAGTVIDVQVF--TREG 1013