Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1341 a.a., DNA-directed RNA polymerase subunit beta from Vibrio cholerae E7946 ATCC 55056

 Score = 80.9 bits (198), Expect = 3e-19
 Identities = 47/160 (29%), Positives = 85/160 (53%), Gaps = 13/160 (8%)

Query: 321 KNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEP 380
           K  I +  G    DD DH  N+R++  G++ E+ FR    ++ + +K +L    + N  P
Sbjct: 430 KKLISIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDNVMP 489

Query: 381 SIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PLSR 436
             Q  + +  ++  ++          G + +SQ +D+ + L+ V+  RR+ +     L+R
Sbjct: 490 --QDLINAKPISAAVKEFF-------GSSQLSQFMDQNNPLSEVTHKRRISALGPGGLTR 540

Query: 437 SQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCK 476
            +  FE RD+H T +G++CP ETPEGPN GL+ +L+   +
Sbjct: 541 ERAGFEVRDVHVTHYGRLCPIETPEGPNIGLINSLSAFAR 580



 Score = 38.9 bits (89), Expect = 1e-06
 Identities = 43/188 (22%), Positives = 82/188 (43%), Gaps = 43/188 (22%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGEEE----KVLSPVEVYIGELPVMLGSEICHLCGKSA 133
           E +IR + YS PL +++   + + +      K +   EVY+GE+P+M  +          
Sbjct: 84  ECQIRGVTYSKPLRVKLRLVIFDKDAPAGTVKDIKEQEVYMGEIPLMTEN---------- 133

Query: 134 EELIKYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICE---KVEKNNKVVDIAKVFST 190
                         G F++NG+E+ +V+Q    P         K   + KV+  A++   
Sbjct: 134 --------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179

Query: 191 RHGFRALCTVERNPDGLLNVSFPGMPSTIPLVILMRALGAESDREIIELISD-------E 243
           R  +      E +P   L V        +P  I++RALG ++  EI+++  +       +
Sbjct: 180 RGSW---LDFEFDPKDNLYVRI-DRRRKLPASIILRALG-KTSAEILDIFFEKVNFEVKD 234

Query: 244 PTVVMQLI 251
            T++M+L+
Sbjct: 235 QTLMMELV 242