Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1100 a.a., DNA-directed RNA polymerase subunit beta from Synechococcus elongatus PCC 7942

 Score =  105 bits (262), Expect = 8e-27
 Identities = 110/427 (25%), Positives = 188/427 (44%), Gaps = 81/427 (18%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGEEEKVLSPVEVYIGELPVMLGSEICHLCGKSAEELI 137
           EA+ R+  YS  +Y   +PT    +E   +   EV+IG+LP+M                 
Sbjct: 70  EAKRRDGTYSVQMY---VPTRLINKETGEIKEQEVFIGDLPLMTDR-------------- 112

Query: 138 KYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICEKVEKNNKVVDIAKVFSTRHGFRAL 197
                     G FI+NG+E+ +V Q    P      + +KN ++   A +   R    A 
Sbjct: 113 ----------GTFIINGAERVIVNQIVRSPGVYYKSERDKNGRLTHNASLIPNRG---AW 159

Query: 198 CTVERNPDGLLNVSFPGMPSTIPLVILMRALGAESDREIIELISDEPTVVMQLIANLQEA 257
              E + +GL+ V        +   +L++ALG  SD EI + +              Q+ 
Sbjct: 160 LKFETDKNGLVWVRID-KTRKLSAQVLLKALGL-SDNEIYDKLRHPEYY--------QKT 209

Query: 258 REEHAINTTEDALEHIGKRVAPGQP-----------------KEYKLKRAETILCNYLL- 299
            ++    + ++AL  + +++ PG+P                 K Y L R      N  L 
Sbjct: 210 IDKEGQFSEDEALMELYRKLRPGEPPTVSGGQQLLESRFFDPKRYDLGRVGRYKLNKKLG 269

Query: 300 -----PHMGVESEKLGAKCKYLGRMAKNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDL 354
                    + SE + A   YL      ++EL LG    DD DH  N+R++  G+L+++ 
Sbjct: 270 LNVADTVRTLTSEDILAAIDYL-----INLELDLGGCEVDDIDHLGNRRVRSVGELLQNQ 324

Query: 355 FRHSFNQLIKDIKYQLERQAIRNKEPSIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQL 414
            R   N+L + I+   ER  + + +    A++ +       +  +A      G + +SQ 
Sbjct: 325 VRVGLNRLERIIR---ERMTVSDSDSLSPASLVNP------KPLVAAIKEFFGSSQLSQF 375

Query: 415 LDRTSYLATVSQLRRVVS----PLSRSQPHFEARDLHATQWGKICPSETPEGPNCGLVKN 470
           +D+T+ LA ++  RR+ +     L+R +  F  RD+H + +G+ICP ETPEGPN GL+ +
Sbjct: 376 MDQTNPLAELTHKRRLSALGPGGLTRERAGFAVRDIHPSHYGRICPIETPEGPNAGLIGS 435

Query: 471 LAVMCKV 477
           LA   +V
Sbjct: 436 LATHARV 442