Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1380 a.a., DNA-directed RNA polymerase subunit beta from Sinorhizobium meliloti 1021

 Score = 81.6 bits (200), Expect = 2e-19
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 13/163 (7%)

Query: 319 MAKNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNK 378
           + K  +EL  G    DD D+  N+R++  G+LME+ +R    ++ + IK ++    I   
Sbjct: 438 VVKMLVELRDGKGEIDDIDNLGNRRVRSVGELMENQYRLGLLRMERAIKERMSSIEIDTV 497

Query: 379 EPSIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PL 434
            P        D++  +   A A      G + +SQ +D+ + L+ ++  RR+ +     L
Sbjct: 498 MPQ-------DLINAKP--AAAAVREFFGSSQLSQFMDQVNPLSEITHKRRLSALGPGGL 548

Query: 435 SRSQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477
           +R +  FE RD+H T +G+ICP ETPEGPN GL+ +LA   +V
Sbjct: 549 TRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARV 591



 Score = 34.7 bits (78), Expect = 2e-05
 Identities = 40/170 (23%), Positives = 73/170 (42%), Gaps = 38/170 (22%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGEEE------KVLSPVEVYIGELPVMLGSEICHLCGK 131
           E R R+L Y+APL + +   V + +E+      K +    VY+G++P+M  +        
Sbjct: 90  ECRQRDLTYAAPLKVTLRLIVFDIDEDTGAKSIKDIKEQNVYMGDMPLMTDN-------- 141

Query: 132 SAEELIKYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICE---KVEKNNKVVDIAKVF 188
                           G FIVNG+E+ +V+Q    P         K   + K++  A+V 
Sbjct: 142 ----------------GTFIVNGTERVIVSQMHRSPGVFFDHDKGKSHSSGKLLFAARVI 185

Query: 189 STRHGFRALCTVERNPDGLLNVSFPGMPSTIPLVILMRALGAESDREIIE 238
             R  +     +E +   +++         IP+  L+ ALG + + EI++
Sbjct: 186 PYRGSW---LDIEFDAKDIVHARI-DRRRKIPVTSLLMALGMDGE-EILD 230