Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1378 a.a., DNA-directed RNA polymerase subunit beta from Phaeobacter inhibens DSM 17395

 Score = 85.1 bits (209), Expect = 1e-20
 Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 13/161 (8%)

Query: 321 KNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEP 380
           K  +EL  G    DD DH  N+R++  G+LME+ +R    ++ + IK ++    I    P
Sbjct: 450 KALVELRDGKGDIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVEIDTVMP 509

Query: 381 SIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PLSR 436
                   D++  +   A A      G + +SQ +D+T+ L+ V+  RR+ +     L+R
Sbjct: 510 Q-------DLINAKP--AAAAVREFFGSSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTR 560

Query: 437 SQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477
            +  FE RD+H T +G++CP ETPEGPN GL+ +LA   +V
Sbjct: 561 ERAGFEVRDVHPTHYGRMCPIETPEGPNIGLINSLATFARV 601



 Score = 33.9 bits (76), Expect = 4e-05
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 30/91 (32%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGEEE------KVLSPVEVYIGELPVMLGSEICHLCGK 131
           E   R++ YSAPL + +   V + +E+      K +   +VY+G++P+M           
Sbjct: 88  ECMQRDMTYSAPLKVTLRLIVFDVDEDTGAKSVKDIKEQDVYMGDMPLMT---------- 137

Query: 132 SAEELIKYGEDTQDPLGYFIVNGSEKAVVAQ 162
                         P G F+VNG+E+ +V+Q
Sbjct: 138 --------------PNGTFVVNGTERVIVSQ 154