Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS

 Score = 87.4 bits (215), Expect = 3e-21
 Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 38/253 (15%)

Query: 234 REIIELISDEPTVVMQLIANLQEAREEHAINTTEDALEHIGKRV-APGQPKEYKLKRAET 292
           + I E        V +++  LQ      A N TE+A   +  ++ A G   E + +    
Sbjct: 437 KAIAEFTGANQGTVQEILNELQYGSRAAAENLTEEAAHTLAAQLKALGANVEVREQLT-- 494

Query: 293 ILCNYLLPHMGVESEKLGAKCKYLGRMAKNSIELYLGLRVEDDKDHYSNKRLKLAGDLME 352
                L P   VES KL              +EL  G    DD DH  N+R++  G+L E
Sbjct: 495 -----LSPRDIVESIKL-------------LVELRNGRGEIDDIDHLGNRRVRSVGELAE 536

Query: 353 DLFRHSFNQLIKDIKYQLERQAIRNKEPS--IQAAVRSDVLTERMRHAMATGNWVGGRTG 410
           + FR    ++ + +K +L +    N  P   I A   S  + E             G + 
Sbjct: 537 NQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFF-----------GSSQ 585

Query: 411 VSQLLDRTSYLATVSQLRRVVS----PLSRSQPHFEARDLHATQWGKICPSETPEGPNCG 466
           +SQ +D+T+ L+ ++  RRV +     L+R +  FE RD+H T +G++CP ETPEGPN G
Sbjct: 586 LSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIG 645

Query: 467 LVKNLAVMCKVTT 479
           L+ +LA+  +  +
Sbjct: 646 LINSLALFARTNS 658



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 27/88 (30%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGEEEKVLSPV---EVYIGELPVMLGSEICHLCGKSAE 134
           E + R L +++ L  ++   + + E    +  V   EVY+GE+P+M  +           
Sbjct: 88  ECQQRGLTFASALRAKVRLVIMDREAPDTVKEVKEQEVYMGEIPLMTTT----------- 136

Query: 135 ELIKYGEDTQDPLGYFIVNGSEKAVVAQ 162
                        G F++NG+E+ +V+Q
Sbjct: 137 -------------GSFVINGTERVIVSQ 151