Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Klebsiella michiganensis M5al

 Score = 79.7 bits (195), Expect = 6e-19
 Identities = 46/157 (29%), Positives = 85/157 (54%), Gaps = 13/157 (8%)

Query: 321 KNSIELYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEP 380
           K  I++  G    DD DH  N+R++  G++ E+ FR    ++ + +K +L    +    P
Sbjct: 430 KKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMP 489

Query: 381 SIQAAVRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PLSR 436
             Q  + +  ++  ++          G + +SQ +D+ + L+ ++  RR+ +     L+R
Sbjct: 490 --QDMINAKPISAAVKEFF-------GSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR 540

Query: 437 SQPHFEARDLHATQWGKICPSETPEGPNCGLVKNLAV 473
            +  FE RD+H T +G++CP ETPEGPN GL+ +L+V
Sbjct: 541 ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSV 577



 Score = 39.7 bits (91), Expect = 7e-07
 Identities = 42/173 (24%), Positives = 75/173 (43%), Gaps = 36/173 (20%)

Query: 78  EARIRNLAYSAPLYLEMIPTVGEGEEE----KVLSPVEVYIGELPVMLGSEICHLCGKSA 133
           E +IR + YSAPL +++   + E E      K +   EVY+GE+P+M  +          
Sbjct: 84  ECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQEVYMGEIPLMTDN---------- 133

Query: 134 EELIKYGEDTQDPLGYFIVNGSEKAVVAQEDLIPNRIICE---KVEKNNKVVDIAKVFST 190
                         G F++NG+E+ +V+Q    P         K   + KV+  A++   
Sbjct: 134 --------------GTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPY 179

Query: 191 RHGFRALCTVERNPDGLLNVSFPGMPSTIPLVILMRALGAESDREIIELISDE 243
           R  +      E +P   L V        +P  I++RAL   ++ +I++L  ++
Sbjct: 180 RGSW---LDFEFDPKDNLFVRI-DRRRKLPATIILRALNYTTE-QILDLFFEK 227