Pairwise Alignments

Query, 499 a.a., DNA-directed RNA polymerase subunit B'' from Methanococcus maripaludis S2

Subject, 1368 a.a., DNA-directed RNA polymerase subunit beta from Cupriavidus basilensis FW507-4G11

 Score = 91.3 bits (225), Expect = 2e-22
 Identities = 63/216 (29%), Positives = 111/216 (51%), Gaps = 15/216 (6%)

Query: 266 TEDALEHIGKRVAPGQPKEYKLKRAETILCNYLLPHMGVESEKLGAKCKYLGRMAKNSIE 325
           TEDA+E + +R+   + + Y L R   +  N  L     E   +  + + +    K  + 
Sbjct: 381 TEDAVEALFQRLFYSE-ESYDLSRVGRMKVNSRLGRPSGEGSMV-LQDEDILETIKILVN 438

Query: 326 LYLGLRVEDDKDHYSNKRLKLAGDLMEDLFRHSFNQLIKDIKYQLERQAIRNKEPSIQAA 385
           L  G    DD DH  N+R++  G+L E+ FR   +++ + +K +L +    N  P     
Sbjct: 439 LRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLSRVERAVKERLGQAETENLMP--HDL 496

Query: 386 VRSDVLTERMRHAMATGNWVGGRTGVSQLLDRTSYLATVSQLRRVVS----PLSRSQPHF 441
           + S  ++  +R          G + +SQ +D+T+ L+ ++  RRV +     L+R +  F
Sbjct: 497 INSKPISSAIREFF-------GSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGF 549

Query: 442 EARDLHATQWGKICPSETPEGPNCGLVKNLAVMCKV 477
           E RD+H T +G++CP ETPEGPN GL+ +LA+  ++
Sbjct: 550 EVRDVHPTHYGRVCPIETPEGPNIGLINSLALYARL 585



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 21/93 (22%), Positives = 39/93 (41%), Gaps = 27/93 (29%)

Query: 73  PITPMEARIRNLAYSAPLYLEMIPTVGEGEEE---KVLSPVEVYIGELPVMLGSEICHLC 129
           P    E + R L + + L  ++   + + E     K +   EVY+GE+P+M  +      
Sbjct: 83  PFDVKECQQRGLTFHSALRAKVRLIINDRENPGKVKEVKEQEVYMGEIPLMTST------ 136

Query: 130 GKSAEELIKYGEDTQDPLGYFIVNGSEKAVVAQ 162
                             G F++NG+E+ +V+Q
Sbjct: 137 ------------------GSFVINGTERVIVSQ 151