Pairwise Alignments

Query, 513 a.a., homocysteine biosynthesis protein from Methanococcus maripaludis S2

Subject, 637 a.a., cyclic nucleotide-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 46.2 bits (108), Expect = 4e-09
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 14/134 (10%)

Query: 390 VKDILSRPVVVGSLNTSITQASRVLIENNINHLPIVD---------ENGKLSGIITSWDI 440
           VK +L+R         SI QA++ + + N++ L I+D         ++  + GI+T  D+
Sbjct: 160 VKQLLTRSAPTIDKQASIQQAAQRMADENVSALLILDNQILLDTEDDSTPMVGIVTERDL 219

Query: 441 AK---AMAQD-KHSISEIMTTYIVSATPDETIDMAARKMSRNNISGLPVVDSNNKVLGVV 496
            +   A   D   ++S++MT  ++S   +  +  A   M RNN+  LPV+    + +G++
Sbjct: 220 CRRVLAQGMDVTQTVSQVMTHEVISLDHNAYVYEAMLAMLRNNVHHLPVL-RERQPIGII 278

Query: 497 SAEDISKLIGRNGL 510
              DI +   +N L
Sbjct: 279 DMTDIVRHESQNSL 292



 Score = 33.5 bits (75), Expect = 2e-05
 Identities = 24/105 (22%), Positives = 53/105 (50%), Gaps = 6/105 (5%)

Query: 390 VKDILSRPVVVGSLNTSITQASRVLIENNINHLPIVDENGKLSGIITSWDIAKAMAQDKH 449
           V  +++  V+    N  + +A   ++ NN++HLP++ E   + GII   DI +  +Q+  
Sbjct: 234 VSQVMTHEVISLDHNAYVYEAMLAMLRNNVHHLPVLRERQPI-GIIDMTDIVRHESQN-- 290

Query: 450 SISEIMTTYIVSATPDETIDMAARKMSRNNISGLPVVDSNNKVLG 494
             S ++ + I   T  + +   A ++  + +  L   D+N+ ++G
Sbjct: 291 --SLLLVSRIYQQTCIDDLAQLANEVKASFVR-LVNEDANSHMIG 332