Pairwise Alignments

Query, 513 a.a., homocysteine biosynthesis protein from Methanococcus maripaludis S2

Subject, 615 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella loihica PV-4

 Score = 50.1 bits (118), Expect = 2e-10
 Identities = 30/116 (25%), Positives = 65/116 (56%), Gaps = 6/116 (5%)

Query: 390 VKDILSRPVVVGSLNTSITQASRVLIENNINHLPIVDENGKLSGIITSWDIAKAMAQDKH 449
           V  ++S+  +   +N S++ A+R++ +N ++ + I+D N KL+GI+T  D+   +  +  
Sbjct: 152 VSSLMSKQPLCLDINASVSDAARLMRDNRVSSVLIID-NQKLAGILTDRDLRNRVLAESL 210

Query: 450 S----ISEIMTTYIVSATPDETIDMAARKMSRNNISGLPVVDSNNKVLGVVSAEDI 501
                + + MT    + + +  +  A   MS++NI  LP++D  + + GV+++ DI
Sbjct: 211 DGSLPVHQAMTVTPTTLSANALVFEAMLLMSQHNIHHLPIMDEGHPI-GVITSTDI 265



 Score = 37.4 bits (85), Expect = 2e-06
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 310 ELGVTNYKDARSGKVTIEVEIEGKKVD--KCMRSASVSSYKVSREISKELKNWISNSEFM 367
           ELG TN   +   K  + ++I     D  + MR   VSS  +    +++L   +++ +  
Sbjct: 145 ELGSTNRVSSLMSKQPLCLDINASVSDAARLMRDNRVSSVLIID--NQKLAGILTDRDLR 202

Query: 368 LTQRLEPLKSAAPKPMKAKMKLVKDILSRPVVVGSLNTSITQASRVLIENNINHLPIVDE 427
                E L  + P         V   ++      S N  + +A  ++ ++NI+HLPI+DE
Sbjct: 203 NRVLAESLDGSLP---------VHQAMTVTPTTLSANALVFEAMLLMSQHNIHHLPIMDE 253

Query: 428 NGKLSGIITSWDIAKAMA 445
            G   G+ITS DI +  +
Sbjct: 254 -GHPIGVITSTDILRGQS 270