Pairwise Alignments

Query, 513 a.a., homocysteine biosynthesis protein from Methanococcus maripaludis S2

Subject, 620 a.a., CBS domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 48.9 bits (115), Expect = 5e-10
 Identities = 33/115 (28%), Positives = 64/115 (55%), Gaps = 10/115 (8%)

Query: 395 SRPVVVGSLNTSITQASRVLIENNINHLPIVDENGKLSGIITSWDIAKAMAQD----KHS 450
           S P+ + + + ++TQA+ ++  + ++ L +V +N KL GI+T  D+   +       + +
Sbjct: 158 SSPITIDA-HATVTQAALLMRNSRVSSL-LVTDNHKLVGILTDKDLRNRVLASGLDGQIA 215

Query: 451 ISEIMTTYIVSATPDETIDMAARKMSRNNISGLPVVDSNN----KVLGVVSAEDI 501
           + + MTT  +S + +  I  A   MS +NI  LP++D  N    K +G+V++ DI
Sbjct: 216 VHQAMTTSPISISSNALIFEAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDI 270



 Score = 36.2 bits (82), Expect = 4e-06
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 397 PVVVGSLNTSITQASRVLIENNINHLPIVDENG----KLSGIITSWDIAK 442
           P+ + S N  I +A  ++ E+NI+HLPI+DE      K  G++TS DI +
Sbjct: 224 PISISS-NALIFEAMLLMSEHNIHHLPIIDEQNTDEVKAIGMVTSTDILR 272



 Score = 31.6 bits (70), Expect = 9e-05
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 451 ISEIMTTYIVSATPDETIDMAARKMSRNNISGLPVVDSNNKVLGVVSAEDISKLIGRNGL 510
           IS +M++  ++     T+  AA  M  + +S L V D N+K++G+++ +D+   +  +GL
Sbjct: 152 ISTLMSSSPITIDAHATVTQAALLMRNSRVSSLLVTD-NHKLVGILTDKDLRNRVLASGL 210