Pairwise Alignments

Query, 513 a.a., homocysteine biosynthesis protein from Methanococcus maripaludis S2

Subject, 620 a.a., cyclic nucleotide-binding protein (RefSeq) from Shewanella sp. ANA-3

 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 35/115 (30%), Positives = 65/115 (56%), Gaps = 10/115 (8%)

Query: 395 SRPVVVGSLNTSITQASRVLIENNINHLPIVDENGKLSGIITSWDIAK----AMAQDKHS 450
           S P+++ + + S+TQA+ ++  + ++ L +V +N KL GI+T  D+      A    + +
Sbjct: 158 SSPIMIDA-HASVTQAALLMRNSRVSSL-LVTDNHKLVGILTDKDLRNRVLAAGLDGRIA 215

Query: 451 ISEIMTTYIVSATPDETIDMAARKMSRNNISGLPVVDSNN----KVLGVVSAEDI 501
           + + MTT  +S + +  I  A   MS +NI  LP++D  N    K +G+V++ DI
Sbjct: 216 VHQAMTTSPISISSNALIFEAMLLMSEHNIHHLPIIDEQNTEEVKAIGMVTSTDI 270



 Score = 36.2 bits (82), Expect = 4e-06
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 5/50 (10%)

Query: 397 PVVVGSLNTSITQASRVLIENNINHLPIVDENG----KLSGIITSWDIAK 442
           P+ + S N  I +A  ++ E+NI+HLPI+DE      K  G++TS DI +
Sbjct: 224 PISISS-NALIFEAMLLMSEHNIHHLPIIDEQNTEEVKAIGMVTSTDILR 272



 Score = 28.1 bits (61), Expect = 0.001
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 451 ISEIMTTYIVSATPDETIDMAARKMSRNNISGLPVVDSNNKVLGVVSAEDISKLIGRNGL 510
           IS +M++  +      ++  AA  M  + +S L V D N+K++G+++ +D+   +   GL
Sbjct: 152 ISTLMSSSPIMIDAHASVTQAALLMRNSRVSSLLVTD-NHKLVGILTDKDLRNRVLAAGL 210