Pairwise Alignments

Query, 132 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 652 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 53.1 bits (126), Expect = 7e-12
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 66  GEAEDIPKIIQKDDEKCIDCGACVVHCPVGALSVDE---EFKILLDEDECIGCKNCAKIC 122
           G  E  P+I Q D  +C+ CG C+  CP GA+   E   E K  + E  C GC  C   C
Sbjct: 568 GRLESDPQISQVDVRRCVGCGKCITTCPYGAIEWMELRGEMKARVIETVCQGCGICTVTC 627

Query: 123 PVNAIKI 129
           P  AI++
Sbjct: 628 PQGAIQL 634



 Score = 30.8 bits (68), Expect = 4e-05
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 23/74 (31%)

Query: 78  DDEKCIDCGACVVHCP-----------VGAL-SVDEEF------KILLDEDECIG----- 114
           D E C  CG C+  CP           VG   S++  F      K ++D   C       
Sbjct: 238 DWELCTGCGLCMEKCPSRKSPDAFNEHVGVTTSINIPFPQAIPKKAIIDPTSCRQFVKGK 297

Query: 115 CKNCAKICPVNAIK 128
           C  CAK+CP  AI+
Sbjct: 298 CGVCAKVCPTGAIR 311



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 85  CGACVVHCPVGALSVDEEFKILLDE 109
           CG C   CP GA+  D E +++ +E
Sbjct: 298 CGVCAKVCPTGAIRYDMEDQVVTEE 322



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 107 LDEDECIGCKNCAKICPVNAIKIFEI 132
           +D   C+GC  C   CP  AI+  E+
Sbjct: 579 VDVRRCVGCGKCITTCPYGAIEWMEL 604



 Score = 22.7 bits (47), Expect = 0.010
 Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 94  VGALSVDEEFKIL-LDEDECIGCKNCAKICP 123
           VG   VD   K   +D + C GC  C + CP
Sbjct: 223 VGNFKVDVRRKATYVDWELCTGCGLCMEKCP 253