Pairwise Alignments

Query, 132 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 49.7 bits (117), Expect = 4e-11
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 78  DDEKCIDCGACVVHCPVGALSVDEEF--KILLDEDECIGCKNCAKICPVNAI 127
           D + C+ CG C   CP  A+ V++ F  ++++DE  C  C  C  +CP NA+
Sbjct: 238 DKDLCVSCGWCANICPADAIEVEKPFEGELIIDEPACNACGACISVCPCNAL 289



 Score = 48.9 bits (115), Expect = 7e-11
 Identities = 26/64 (40%), Positives = 35/64 (54%), Gaps = 12/64 (18%)

Query: 75  IQKDDEKCIDCGACVVHCP----------VGALSVDEEFKILLDEDECIGCKNCAKICPV 124
           I+KDD  C+ CG C  +CP          + ALS++    I +D D C+ CK C K CP 
Sbjct: 149 IKKDD--CVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPH 206

Query: 125 NAIK 128
           NAI+
Sbjct: 207 NAIE 210



 Score = 46.6 bits (109), Expect = 3e-10
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 12/79 (15%)

Query: 63  KKFGEAEDIPKI---IQKDDEKCIDCGACVVHCPVGALSVDEEF---------KILLDED 110
           K   E    PKI   I+ +  KC+ C  C + CP  A+ V+ E          +I + +D
Sbjct: 93  KPITEMPQYPKIKRGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEITIKKD 152

Query: 111 ECIGCKNCAKICPVNAIKI 129
           +C+ C  CA+ CP +AI++
Sbjct: 153 DCVLCGICAEYCPADAIEL 171



 Score = 43.5 bits (101), Expect = 3e-09
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 78  DDEKCIDCGACVVHCPVGALSVDEEFK-------ILLDEDECIGCKNCAKICPVNAIKI 129
           D+  C  CGAC+  CP  AL   +  K       +++++D CI C  C   CPV+A+ +
Sbjct: 270 DEPACNACGACISVCPCNALVFPQPEKQGDKVPNVVVNQDVCILCGACTHSCPVDALTV 328



 Score = 40.4 bits (93), Expect = 2e-08
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 9/66 (13%)

Query: 73  KIIQKDDEKCIDCGACVVHCPVGALSV---------DEEFKILLDEDECIGCKNCAKICP 123
           ++++ DD  C+ CG C   CP  A+ +         D +   L   ++C+ C  CA  CP
Sbjct: 23  RVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDISEKCVLCGMCACACP 82

Query: 124 VNAIKI 129
            +A+K+
Sbjct: 83  FDAVKL 88



 Score = 35.8 bits (81), Expect = 6e-07
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 18/73 (24%)

Query: 75  IQKDDEKCIDCGACVVHCPVGALSV------------------DEEFKILLDEDECIGCK 116
           I+ D + C+ C  C   CP  A+                    + + +  +D+D C+ C 
Sbjct: 187 IKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKDLCVSCG 246

Query: 117 NCAKICPVNAIKI 129
            CA ICP +AI++
Sbjct: 247 WCANICPADAIEV 259



 Score = 33.1 bits (74), Expect = 4e-06
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 67  EAEDIPKIIQKDDEKCIDCGACVVHCPVGALSV 99
           + + +P ++   D  CI CGAC   CPV AL+V
Sbjct: 297 QGDKVPNVVVNQDV-CILCGACTHSCPVDALTV 328