Pairwise Alignments

Query, 132 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 58.9 bits (141), Expect = 7e-14
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)

Query: 70  DIPKIIQK--DDEKCIDCGACVVHCPVGALSVDEEFKILLDEDECIGCKNCAKICPV-NA 126
           ++PKII    D+E C+ CG C   CPV A+S +      +D + C+ CKNC K+CPV NA
Sbjct: 114 NVPKIINLLIDEEICVSCGTCENACPVDAISHNNTGLYEIDVNICVSCKNCLKVCPVENA 173

Query: 127 IKIFE 131
           I  ++
Sbjct: 174 IVTYD 178



 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 80  EKCIDCGACVVHCPVGALSVD--EEFK---ILLDEDECIGCKNCAKICPVNAIKI 129
           EKCI C AC   CP  A+S++  EEFK    + D   CI C NC + CP N +++
Sbjct: 47  EKCISCSACKESCPSDAISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEM 101



 Score = 46.6 bits (109), Expect = 4e-10
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 14/64 (21%)

Query: 78  DDEKCIDCGACVVHCPVGAL--------------SVDEEFKILLDEDECIGCKNCAKICP 123
           D   CI+CG CV  CP   L              +V +   +L+DE+ C+ C  C   CP
Sbjct: 80  DAGSCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENACP 139

Query: 124 VNAI 127
           V+AI
Sbjct: 140 VDAI 143



 Score = 38.9 bits (89), Expect = 8e-08
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 24/97 (24%)

Query: 48  LTGDEEQIEKSIEILKK-----------FGEAED----IPKIIQKDDEKCIDCGACVVHC 92
           +T DE  + + IEI +            F E  D    IP+I+      CI CG CV  C
Sbjct: 175 VTYDEPGLSEKIEIAQNTKFDRERLGSDFKEESDVIAEIPRIVPS---LCIGCGNCVDVC 231

Query: 93  PVGALSVDEEFKILLDEDECIGCKNCAKICPVNAIKI 129
           P G++ ++      L    CI    C ++CP  AI+I
Sbjct: 232 P-GSIDLER-----LKVTSCIKSGKCLEVCPTTAIRI 262



 Score = 38.9 bits (89), Expect = 8e-08
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 8/51 (15%)

Query: 82  CIDCGACVVHCPVGALSVDEEFKI--------LLDEDECIGCKNCAKICPV 124
           CI  G C+  CP  A+ +    KI        ++DE++CIGC+ C + C V
Sbjct: 245 CIKSGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIGCRICYRACNV 295



 Score = 38.5 bits (88), Expect = 1e-07
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 78  DDEKCIDCGACVVHCPV-GALSVDEEFKI-LLDEDECIGCKNCAKICPVNAI 127
           D+EKCI C  C   C V  A+ + +E  +  ++ + C+ C  C   CPV+AI
Sbjct: 279 DEEKCIGCRICYRACNVPEAILISKETNLPYINPEYCVRCGLCQNACPVDAI 330