Pairwise Alignments

Query, 383 a.a., tRNA 4-thiouridine(8) synthase ThiI from Methanococcus maripaludis S2

Subject, 484 a.a., thiamine biosynthesis protein ThiI (RefSeq) from Shewanella amazonensis SB2B

 Score =  154 bits (389), Expect = 5e-42
 Identities = 114/378 (30%), Positives = 195/378 (51%), Gaps = 21/378 (5%)

Query: 3   KFIVR-YGEIGTKSRQTMHRFEKLLAKNISKLAKKHGISAEVEIIHTRLIVDVPEEN--- 58
           KFIV+ Y EI  KS+    RF K+L  NI  + KK    A+V+    +++V VP++    
Sbjct: 2   KFIVKLYPEIMIKSKPVRMRFTKMLESNIRNVLKKIDEDAKVQRQWDKIMVKVPKDKPEL 61

Query: 59  FEKMKELLKKVPGIVSFSPCYYIDPDIEQIKKISSELFEKEIERYENK-ENITFRVKTQR 117
            E   E L  +PGI      +++    E   +   ++++  +  Y +  ++ TF V+ +R
Sbjct: 62  TELFAERLAHIPGI------HHVLQVAEYDFETVDDIYQLALPVYRDMLKDKTFCVRVKR 115

Query: 118 PQKKFPLTSLEVNMEVGGPISEKYGIK-VDLKNPTISLDIEVFNEYAYVFAKRIEGIGGI 176
             +     S+EV   VGG +++    K V LKNP +++ +E+  +  Y+ ++RIEG+GG 
Sbjct: 116 AGQH-DFNSIEVERYVGGGLNQFTEAKGVQLKNPDVTIQLEIDRDKLYMVSQRIEGLGGF 174

Query: 177 PVGTQGKVIVLLSDGIDSPVSAYMMAKRGCKL--LLLHMKTSDEGLEKTQKLVDVLSDFD 234
           P+  Q  V+ L+S G DS V+++   K+G +      ++  +   +   Q    +   + 
Sbjct: 175 PIAAQEDVLSLISGGFDSGVASFQFIKKGSRTHYCFFNLGGAQHEIGVKQVAYHLWKTYG 234

Query: 235 P--EAKFVYVDFNEELAKIKAELTEINRDKYTCLYCKKYMLKLAEKHAKWHKCDAIVNGD 292
              + KFV V F E    +  E+ E   +    +  K+ M++ A + A+     A+V G+
Sbjct: 235 ESHKVKFVSVPFEE----VVTEILERIENGQMGVVLKRMMMRAATRVAERMGIQALVTGE 290

Query: 293 NMGQVASQTLKNLRVISEGIDYPILRPLIGLDKVEIMDIARKIGTFDISTSKEVSCFAVP 352
           ++GQV+SQTL NL VI    D  ILRPLI +DK +I+  AR+IGT D + S    C  + 
Sbjct: 291 SLGQVSSQTLTNLNVIDRSTDLLILRPLISMDKPDIIREARRIGTEDFAASMPEYCGVIS 350

Query: 353 KHPITNATPDEMEKIEEQ 370
           + P   A   ++E  E++
Sbjct: 351 QRPTVKAVLSKVEAEEQK 368