Pairwise Alignments

Query, 383 a.a., tRNA 4-thiouridine(8) synthase ThiI from Methanococcus maripaludis S2

Subject, 485 a.a., thiamine biosynthesis protein ThiI (RefSeq) from Shewanella loihica PV-4

 Score =  157 bits (397), Expect = 6e-43
 Identities = 122/385 (31%), Positives = 199/385 (51%), Gaps = 25/385 (6%)

Query: 3   KFIVR-YGEIGTKSRQTMHRFEKLLAKNISKLAKKHGISAEVEIIHTRLIVDVPE---EN 58
           KFIV+ + EI  KS+    RF K+L  NI  + +K    A V+    +++V VPE   E 
Sbjct: 2   KFIVKLFPEIMMKSKPVRMRFTKMLETNIRNVLRKVDEEARVQRQWDKIMVRVPEDKPEM 61

Query: 59  FEKMKELLKKVPGIVSFSPCYYIDPDIEQIKKISSELFEKEIERY-ENKENITFRVKTQR 117
            E+  E L  +PGI       ++    E   +   +++++ +  Y E     TF V+ +R
Sbjct: 62  IERYAERLACIPGIA------HVLQVRESTFESVDDIYQQTLALYKEELAGKTFCVRVKR 115

Query: 118 PQKKFPLTSLEVNMEVGGPISE-KYGIKVDLKNPTISLDIEVFNEYAYVFAKRIEGIGGI 176
              K    S+EV   VGG +++      V LKNP +++++E+ NE+ Y+  KRI+G+GG 
Sbjct: 116 -SGKHEFNSIEVERYVGGGLNQFTEAAGVRLKNPDMTVNLEIDNEHLYLVEKRIDGLGGF 174

Query: 177 PVGTQGKVIVLLSDGIDSPVSAYMMAKRGCKLLLLHMKTSDE----GLEKTQKLVDVLSD 232
           P+ TQ  V+ L+S G DS VS++   KRG +          +    G+++    +     
Sbjct: 175 PMATQEDVLSLISGGFDSGVSSFQFIKRGSRTHYCFFNLGGDQHEIGVKQVAYHLWQKYG 234

Query: 233 FDPEAKFVYVDFNEELAKIKAELTEINRDKYTCLYCKKYMLKLAEKHAKWHKCDAIVNGD 292
              + KF+ V F+  + +I   L +I+  +   +  K+ M++ A + A+     A+V G+
Sbjct: 235 ESHKVKFISVPFDPVVQEI---LEKIDNGQMGVIL-KRMMMRAASRIAEKMGIQALVTGE 290

Query: 293 NMGQVASQTLKNLRVISEGIDYPILRPLIGLDKVEIMDIARKIGTFDISTSKEVSCFAVP 352
            MGQV+SQTL NL VI    D  ILRPLI +DK +I++++R+IGT D + S    C  + 
Sbjct: 291 AMGQVSSQTLTNLNVIDRSTDMLILRPLIVMDKQDIINMSREIGTEDFAKSIPEYCGVIS 350

Query: 353 KHPITNATPD----EMEKIEEQLLN 373
           + P   A       E EK  E L++
Sbjct: 351 QKPTVKAVMGKILAEEEKFSEDLID 375