Pairwise Alignments

Query, 383 a.a., tRNA 4-thiouridine(8) synthase ThiI from Methanococcus maripaludis S2

Subject, 484 a.a., thiamine biosynthesis protein ThiI (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  153 bits (387), Expect = 9e-42
 Identities = 123/385 (31%), Positives = 199/385 (51%), Gaps = 25/385 (6%)

Query: 3   KFIVR-YGEIGTKSRQTMHRFEKLLAKNISKLAKKHGISAEVEIIHTRLIVDVPEENFEK 61
           KFIV+ Y EI  KS+    RF K+L  NI  + KK    A+V+    R++V VP+   E 
Sbjct: 2   KFIVKLYPEIMMKSKPVRMRFTKMLETNIRNVLKKVDDDAKVQRQWDRIMVMVPKNKPEL 61

Query: 62  MK---ELLKKVPGIVSFSPCYYIDPDIEQIKKISSELFEKEIERYENK-ENITFRVKTQR 117
            +   E L  +PGI      + +  D      +  +++++ +  Y ++    TF V+ +R
Sbjct: 62  AQAFGERLACIPGIA-----HVVQVDEYSFTSVD-DIYQQVLPVYRDQIAGKTFCVRVKR 115

Query: 118 PQKKFPLTSLEVNMEVGGPISE-KYGIKVDLKNPTISLDIEVFNEYAYVFAKRIEGIGGI 176
                   S+EV   VGG +++    I V LKNP +++++E+  +  Y+  KRIEG+GG 
Sbjct: 116 TGSH-DFNSIEVERYVGGGLNQFTDAIGVRLKNPEVTVNLEIEGDKLYMVTKRIEGLGGF 174

Query: 177 PVGTQGKVIVLLSDGIDSPVSAYMMAKRGCKL--LLLHMKTSDEGLEKTQKLVDVLSDFD 234
           P+ TQ  V+ L+S G DS VS+Y   K+G +      ++  +   +   Q    +   F 
Sbjct: 175 PMATQEDVLSLISGGFDSGVSSYQFIKKGARTHYCFFNLGGAQHEIGVKQVAYHLWKTFG 234

Query: 235 P--EAKFVYVDFNEELAKIKAELTEINRDKYTCLYCKKYMLKLAEKHAKWHKCDAIVNGD 292
              + KFV V F   +A+I   L +I+  +   +  K+ M++ A + A+     AIV G+
Sbjct: 235 ESHKVKFVSVPFEPVVAEI---LEKIDNGQMGVVL-KRMMMRTAARIAERMGIQAIVTGE 290

Query: 293 NMGQVASQTLKNLRVISEGIDYPILRPLIGLDKVEIMDIARKIGTFDISTSKEVSCFAVP 352
           ++GQV+SQTL NL VI    D  ILRPLI +DK +I++  R+IGT D + S    C  + 
Sbjct: 291 SLGQVSSQTLTNLNVIDRCTDMLILRPLITMDKQDIINECRRIGTEDFAKSMPEYCGVIS 350

Query: 353 KHPITNATPDEME----KIEEQLLN 373
           + P   A   ++E    K  E L++
Sbjct: 351 QKPTVKAVLAKVEAEETKFSEDLID 375