Pairwise Alignments

Query, 324 a.a., tRNA 2-thiocytidine biosynthesis TtcA family protein from Methanococcus maripaludis S2

Subject, 274 a.a., tRNA(Cytosine32)-2-thiocytidine synthetase from Pseudomonas fluorescens FW300-N2E2

 Score = 57.4 bits (137), Expect = 4e-13
 Identities = 65/277 (23%), Positives = 118/277 (42%), Gaps = 42/277 (15%)

Query: 47  IPVVYSRVFEEISERMGRFVSKNNIISPKDKILVGLSGGKDSLALLHLLEPYRRKYGVQI 106
           + V  +++ + +    G  V+  N+I   DK++V LSGGKDS  LL +L   ++   ++ 
Sbjct: 4   LTVNQNKLQKRLRRLAGEAVADFNMIEDGDKVMVCLSGGKDSYTLLDVLMHLQKVAPIKF 63

Query: 107 YAVTVDLNINGIRPWTESNKNVEKIAEHCKNLNIPHKIIAHDGNVVEMSKILSENTKGIE 166
             V V  N++  +P    +     +  + ++L + + I+  D   V + +++ E      
Sbjct: 64  DIVAV--NMDQKQPGFPEH----VLPAYLESLGVEYHIVEKDTYSV-VKELIPEGK---- 112

Query: 167 YSPCFSCSMVRRHVLTNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALEPI 226
            + C  CS +RR  L  +A    +     K+A+GH  +D  +T   N+F    +KA+ P 
Sbjct: 113 -TTCSLCSRLRRGTLYTFA----DEIGATKMALGHHRDDIVETFFLNMFYNGSLKAMPP- 166

Query: 227 KNFNETDVDFKDFKLNLKSCCMIRPMLNVSEEKIVKALVECDIEYYHDKDECPYSRHN-- 284
                        + +     +IRP+   SE+         DI+ Y D  + P    N  
Sbjct: 167 -----------KLRADDGRNVVIRPLAYCSEK---------DIQAYSDFKQFPIIPCNLC 206

Query: 285 ---GNGIRKKSHEVLESIEEDVPNIREMVISSILNSI 318
               N  R+   E+L+  E   P   E +   + N I
Sbjct: 207 GSQENLQRQVVKEMLQEWERKTPGRTESIFRGLQNVI 243