Pairwise Alignments

Query, 324 a.a., tRNA 2-thiocytidine biosynthesis TtcA family protein from Methanococcus maripaludis S2

Subject, 274 a.a., tRNA 2-thiocytidine biosynthesis protein TtcA from Pseudomonas fluorescens FW300-N2C3

 Score = 57.8 bits (138), Expect = 3e-13
 Identities = 64/268 (23%), Positives = 114/268 (42%), Gaps = 42/268 (15%)

Query: 56  EEISERMGRFVSKNNIISPKDKILVGLSGGKDSLALLHLLEPYRRKYGVQIYAVTVDLNI 115
           + +  + G  V+  N+I   DK++V LSGGKDS  LL +L   ++   ++   V V  N+
Sbjct: 13  KRLRRQAGEAVADFNMIEDGDKVMVCLSGGKDSYTLLDVLMHLQKVAPIKFDIVAV--NM 70

Query: 116 NGIRPWTESNKNVEKIAEHCKNLNIPHKIIAHDGNVVEMSKILSENTKGIEYSPCFSCSM 175
           +  +P    +     +  + ++L + + I+  D   V + +++ E       + C  CS 
Sbjct: 71  DQKQPGFPEH----VLPAYLESLGVEYHIVEKDTYSV-VKELIPEGK-----TTCSLCSR 120

Query: 176 VRRHVLTNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALEPIKNFNETDVD 235
           +RR  L  +A    +     K+A+GH  +D  +T   N+F    +KA+ P          
Sbjct: 121 LRRGTLYTFA----DEIGATKMALGHHRDDIVETFFLNMFYNGSLKAMPP---------- 166

Query: 236 FKDFKLNLKSCCMIRPMLNVSEEKIVKALVECDIEYYHDKDECPYSRHN-----GNGIRK 290
               + +     +IRP+   SE+         DI+ Y D  + P    N      N  R+
Sbjct: 167 --KLRADDGRNVVIRPLAYCSEK---------DIQAYSDFKQFPIIPCNLCGSQENLQRQ 215

Query: 291 KSHEVLESIEEDVPNIREMVISSILNSI 318
              E+L+  E   P   E +   + N I
Sbjct: 216 VVKEMLQEWERKTPGRTESIFRGLQNVI 243