Pairwise Alignments

Query, 324 a.a., tRNA 2-thiocytidine biosynthesis TtcA family protein from Methanococcus maripaludis S2

Subject, 248 a.a., PP-loop domain protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 44.3 bits (103), Expect = 3e-09
 Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 44/224 (19%)

Query: 63  GRFVSKNNIISPKDKILVGLSGGKDSLALLHLLEPYRR--KYGVQIYAVTVD-----LNI 115
           G+ + + ++I P  +I V +SGG DS  LL +L+  +R   +  +I A+ V+      N 
Sbjct: 18  GKLMQQTSMIHPGARIGVAVSGGMDSWVLLQVLKLRQRIVPFRFEIMALHVNPGFDPHNH 77

Query: 116 NGIRPWTESNKNVEKIAEHCKNLNIPHKIIAHDGNVVEMSKILSENTKGIEYSPCFSCSM 175
             + PW  +N     +A H +  +  H  +AH             +   +  SPCF C+ 
Sbjct: 78  APLLPWLRAN----GVASHIEVTD--HGPVAH-------------SPANLRNSPCFYCAK 118

Query: 176 VRRHVLTNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALEPIKNFNETDVD 235
           +RR  L    K          +A GH  +D   T   N+ +   +  +   + F      
Sbjct: 119 LRRTRLFELCKQY----GLTHLAFGHNADDLVTTFFMNLVQTGRVDGMSMKEAF------ 168

Query: 236 FKDFKLNLKSCCMIRPMLNVSEEKIVKALVECDIEYYHDKDECP 279
              F   L    +IRPM+ V +  I +A+ + ++  +   + CP
Sbjct: 169 ---FGGRL---TVIRPMMLVEKPVIARAVKQWNLPVW--TNPCP 204