Pairwise Alignments

Query, 324 a.a., tRNA 2-thiocytidine biosynthesis TtcA family protein from Methanococcus maripaludis S2

Subject, 310 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 66.6 bits (161), Expect = 7e-16
 Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 16/174 (9%)

Query: 52  SRVFEEISERMGRFVSKNNIISPKDKILVGLSGGKDSLALLHLLEPYRRKYGVQIYAVTV 111
           +++ + +   +G  ++  N+I   D+++  LSGGKDS A+L +L   +++  VQ   + V
Sbjct: 14  NKLQKRLRREVGSAIADYNMIEDGDRVMCCLSGGKDSYAMLDILLNLQQRAPVQFEIIAV 73

Query: 112 DLNINGIRPWTESNKNVEKIAEHCKNLNIPHKIIAHDGNVVEMSKILSENTKGIEYSPCF 171
           +L+        +     + +  +  +LN+P+ I+  D   +   KI    T       C 
Sbjct: 74  NLD------QKQPGFPEDVLPAYLDSLNVPYHILEKDTYSIVKEKIPEGKT------TCS 121

Query: 172 SCSMVRRHVLTNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALEP 225
            CS +RR  L  +A    +     KIA+GH  +D  +T+  N+F G  +KA+ P
Sbjct: 122 LCSRLRRGTLYGFA----QRIGATKIALGHHRDDIIETLFLNMFFGGKMKAMPP 171