Pairwise Alignments

Query, 324 a.a., tRNA 2-thiocytidine biosynthesis TtcA family protein from Methanococcus maripaludis S2

Subject, 248 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 81.3 bits (199), Expect = 2e-20
 Identities = 74/267 (27%), Positives = 113/267 (42%), Gaps = 41/267 (15%)

Query: 53  RVFEEISERMGRFVSKNNIISPKDKILVGLSGGKDSLALLHLLEPYRRKYGVQIYAVTVD 112
           +    I  R  + V +  +I   DKIL+GLSGGKDSLAL+ LL    R Y  +   + V 
Sbjct: 9   KTIRRIERRFNKGVVQYRLIEEGDKILIGLSGGKDSLALVELLGKRARIYKPRFSVIAVH 68

Query: 113 LNINGIRPWTESNKNVEKIAEHCKNLNIPHKIIAHDGNVVEMSKILSENTKGIEYSPCFS 172
           + +N I P+     + E +  +C +  +P   + ++ +         +       SPCF 
Sbjct: 69  VVMNNI-PY---QSDTEYLKAYCDSFGVP--FVQYETSF--------DPATDTRKSPCFL 114

Query: 173 CSMVRRHVLTNYAKNNFESDSNVKIAIGHTLEDNSDTIMANIFKGNIIKALEP---IKNF 229
           CS  RR  L   AK   E   N KIA+GH ++D  +T++ NI        + P   +K F
Sbjct: 115 CSWNRRKALFTVAK---EQGCN-KIALGHHMDDILETLLMNITYQGAFSTMPPRLVMKKF 170

Query: 230 NETDVDFKDFKLNLKSCCMIRPMLNVSEEKIVKALVECDIEYYHDKDECPYSRHNGNGIR 289
           + T               +IRPM  V E  +++     D  Y      CPY   +    R
Sbjct: 171 DMT---------------IIRPMCMVHEADLIELAALHD--YRKQVKNCPYESQSS---R 210

Query: 290 KKSHEVLESIEEDVPNIREMVISSILN 316
                +L  +E   P  R  +  S+ N
Sbjct: 211 SDMKGILRQLEAMNPEARYSLWGSMTN 237