Pairwise Alignments

Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 1013 a.a., nuclease SbcCD subunit C from Vibrio cholerae E7946 ATCC 55056

 Score = 67.4 bits (163), Expect = 5e-15
 Identities = 183/1040 (17%), Positives = 410/1040 (39%), Gaps = 174/1040 (16%)

Query: 28  IIGQNGSGKSSIFQAMNFALFAPRGNNFRIENLMQQGAAS----FSVELEFEMMGNTYLV 83
           I G  G+GKSSI  A+ +AL+     + R  + M+   A+      V  EFE+ G  Y +
Sbjct: 33  INGATGAGKSSILDAICYALYGETTGSERTGDQMRCDYAAPESLTEVIFEFELAGARYQI 92

Query: 84  KRKRFQH-----------KTDDKLYV-----NGKLNAESASEINKKIEEILEIDNSVFSN 127
            R+  Q            K+     V       +L A   + + K + E++ +D   F  
Sbjct: 93  TRQPDQEIPKKRGEGMTKKSHSATLVALKSDGNELIANKPNPVAKAVVELMGLDVKQFRQ 152

Query: 128 AIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKYEKAS----EKMNIVKKSYEETLLKLEG 183
            + + QG+   L+    ++R+++ G+L   + Y +      E+   ++K  EE   +++G
Sbjct: 153 VMVLPQGKFRELLTANSKEREQIFGQLFQTQLYSQIERALFERAAGIRKEKEEFDQQIKG 212

Query: 184 ELTQEPEILENLEKLKNEVSE-SEIL---KEEILKKYENLEKLKLEKNSEILQMEEKFAE 239
            L+     LE+ E+L+ E++E + +L   + ++  + +  ++ K    +  L++E++F  
Sbjct: 213 TLSVVG--LESEEQLQTELTELAPVLTHAQSQLKAEQQQWDETKAHYQA-ALELEQQFIR 269

Query: 240 NNQLKENL---KDIISEIKNINLEIQNFKNSLNLVAEESKNISENEENYKKYLELELKIK 296
             QL   +   ++  + I+ +  + Q  + +  L A       +  +  K   + +LK++
Sbjct: 270 KQQLVVEIATHQEQATHIEMLRQQRQQAQKAARLTAVH----QQWHQAQKNLQQAKLKVE 325

Query: 297 ELNNKLIGHKSNYESYNKLKTIEESLLKELGVLKESLKDNKKNPDELKENLKENDEKILI 356
           +                     +++LL++    ++  +   +      E + + +E+ + 
Sbjct: 326 Q---------------------QQTLLQQAKAQQQQAQQASQQASLACEEVPKLNEQRIT 364

Query: 357 LDKIKEKIKELEFIEKQIYEIKIHKKTVETLFDSVKIYDDSIKTFEELKTKKNSYENLLK 416
             + ++K+   E +++ +                        K   EL+    +  NL +
Sbjct: 365 WQRAEQKLLAQENVQQAV-----------------------AKAERELQLATQNALNLQQ 401

Query: 417 EKFDLEKKLQNETDEKTKLISELTDFEKIEEKIN---LENELKEKYEDLSEKIDKLNEIV 473
               LE++LQN+  E  +   +LT  E  + ++N    + + +E+ + L  ++    + +
Sbjct: 402 ASEKLEQELQNQRLEWEQQQRQLTRLEVQKARMNQLVQQVQAREREQSLLNELQTAQQAL 461

Query: 474 LKKESKISEYKNSKAELEKTKDS----------------------CHVCQSKITEEKKQE 511
           L+ E +    +    + + T D                       C VC S     K Q 
Sbjct: 462 LRFEQQHHHIQTQAEQAKLTADKLEFAWHTQRAAELALALTQNEPCPVCGSLEHPNKAQ- 520

Query: 512 LLEKYNSEIQNEQLSTESLKKQLEIILNKKEKMKVKLNEIDSFKLKYGELKEKKNYSLKV 571
               Y+ ++  +    ++ ++Q + +  ++E       +   FK +    +  +N +   
Sbjct: 521 ----YSGDVVTKVQVEQARQQQQDWVQRQQEAFHAWQQQ--GFKTE----QIAQNLTTLS 570

Query: 572 EESIIETTEKLNELTGKINEYSSLNDEISLIEN-----KLKNLENDYKNCNYSSQFLTKN 626
            E  ++    LNEL   I +   L+ +I+ ++        + +E   +   ++   L K 
Sbjct: 571 SELTLQQVALLNEL---IEQQQILHSDIAALQQLNPDLLKRQIEEGEQRLAHTKMTLEKQ 627

Query: 627 D-------------ESEFLTKKLELSKIIGDYDS-----SKIENEKKSLENLKDELKNTI 668
           +             ++E  + + E+   + D D+      +++N+ + L+  +   +   
Sbjct: 628 NQNQQQAWQTLAQLQAELASLRQEIPPELSDLDTLRSAIGRVQNQIEILQKAEHTAR--- 684

Query: 669 YNLEREINLKKELKNIQNDISSKI-GIVECYVKWETEKSDFENKLSECKENYEKYMESLA 727
              E+ +  +K+  ++Q    + I    E   + E   S ++  L     + E    +  
Sbjct: 685 ---EQWVQAQKQFASVQAAYQAAIEAHRESQRQQEETTSAWQQGLLHSGFSDESAYLAAR 741

Query: 728 VLKNYSKTYSVEINNLNEFLNQKIAEKQQFCEKLLE-TRTEIEKNIQTVNYNPELHENAK 786
           +          +I    E       E+Q    KL E  R E+E  +  V    E    A 
Sbjct: 742 LTDEAIVNIERQIAQYEERSAMLSGEQQALSRKLAEKNRPELEPLLVKVTQAEEKMALAL 801

Query: 787 RLYENILNEFNDILRTLERISSELKLKNENISYLNEKIQNLSNKKEEK--KKIEEFKEYL 844
           + +    +  + + R  +++ ++L  KN  +    + +  LS+    K   K+   +  L
Sbjct: 802 QAFTQHQSRMDGLQRVAKQL-ADLYQKNRALEAEYQVVGTLSDIANGKTGAKVSLHRFVL 860

Query: 845 DKIKREIF--SKDGFQKYLREKYIPLIQRHTNQIFQEFELPYSHIQLKDDYSLIVDGLPV 902
             +  ++   +     K  R +Y  L++R   +           + ++D YS       V
Sbjct: 861 GVLLDDVLLQASQRLMKMSRGRY--LLKRKEERAKGNVGSGLD-LMVEDSYS--GKWRDV 915

Query: 903 ETLSGGEQIAVSLALRLGISKAVCN-----NIECIILDEPTAYLDEDRR----KNLLNIF 953
            TLSGGE    +L+L LG+S  V        ++ + +DE    LD +      + L+++ 
Sbjct: 916 ATLSGGESFMAALSLALGLSDVVQAYSGGIRLDTLFIDEGFGSLDPESLDLAIQTLIDLQ 975

Query: 954 KNIKTINQMAIITHHQELEQ 973
           +  +TI    II+H  EL++
Sbjct: 976 QGGRTI---GIISHVTELKE 992