Pairwise Alignments

Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 1000 a.a., exonuclease SbcC from Synechococcus elongatus PCC 7942

 Score = 81.6 bits (200), Expect = 2e-19
 Identities = 149/994 (14%), Positives = 427/994 (42%), Gaps = 91/994 (9%)

Query: 1   MIIKNIKMENFRSHRNTSINFSKGITSIIGQNGSGKSSIFQAMNFALFAP--RGNNFRIE 58
           MI+  +++ +F S+R   +   + +  + G +GSGK+++ +A+ +AL+    RG++   +
Sbjct: 1   MILLRLQLHHFLSYREADLALGQQLVVVSGVSGSGKTALLEAIAWALWGQSLRGDS---Q 57

Query: 59  NLMQQGAASFSVELEFEMMGNTYLVKRKRFQHKTDDKLYV---------NGKLNAESASE 109
           +L+Q  A   +V LEF+     + V+R R   +T  +L +           +++  +A  
Sbjct: 58  DLIQDSADWMAVTLEFQQSHQQFQVQR-RHDRQTGTQLQLWQRSHPDEPWAEISQSTAIA 116

Query: 110 INKKIEEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKYEK---ASEK 166
              ++ ++L  D + F + +Y+ QG+ +  +Q +  DR + +  L  +++      A+  
Sbjct: 117 TQAQLTQVLGWDYTHFCHTVYVPQGQPSPWVQRSASDRYQQLAHLFQLDRLRPLALAARD 176

Query: 167 MNIVKKSYEETLLKLEGELTQEPEILENLEKLKNEVSESEILKEEILKKYENLEKLKLEK 226
            +   ++ EE       +L Q+ +  + L + +++  +     ++        ++  +++
Sbjct: 177 RDRSLQAEEEWFFAQRQQLQQQADQQQQLAETRSQYQQQLAALQQ--------QRAAIDQ 228

Query: 227 NSEILQMEEKFAENNQLKENLKDIISEIKNINLEIQNFKNSLNLVAEESKNISENEENYK 286
             + L+   + AE+ Q   + + +  +I+ +  ++    +   L+AE  +  ++ +    
Sbjct: 229 QQQTLEQRWQAAEHQQ--RDRQALAQQIQQLQTQL---GDQQRLLAENQQRQAQAQHILS 283

Query: 287 KYLELELKIKELNNKLIGHKSNYESYNKLKTIEESLLKELGVLKESLKDNKKNPDELKEN 346
           + L +  + ++            +     + + E L +       +++ +++    +++ 
Sbjct: 284 RALSIRAEWQQWQQSQQQASRWAQQTEAQQALSEQLQQVQRQYDAAVRQHQQAIATVQQQ 343

Query: 347 LKENDEKILILDKIKEKIKELEFIEKQIYEIK---IHKKTVETLFDSVKIYDDSIKT-FE 402
           L+   E ++  + + ++   +    +Q+ + +      +   T    +      ++T   
Sbjct: 344 LQAGQEALVQFEPLLQQATAIAAGYQQLQQARQELAQAQQRHTAAQPLLAQRQQVQTQLG 403

Query: 403 ELKTKKNSY-ENLLKEKFDLEKKLQNETDEKTKLISELTDFEKIEEKINLENELKEKYED 461
           + + +  ++ E+L  ++  L ++ ++  + +  L S      ++E+  +  N+++EK ++
Sbjct: 404 QARLRLQAHLEDLQGQRLQLRQQHRDRGELEQALASVSQTITQLEQHQHYRNQVQEKQQE 463

Query: 462 LSEKIDKLNEIVLKKESKISEYKNSKAELEKTKDSCHVCQSKITEEKKQELLEKY---NS 518
            S  + +L       E++++E + S+A       +C +C   +  +  Q L ++Y    +
Sbjct: 464 RSNFLARLQARQRDYEAQLAELE-SQARAIAPHGTCPLCDQALDPDHWQHLQQRYQQQQT 522

Query: 519 EIQN------EQLSTESLKKQLEIILNKKEKMKVKLNEIDSFKLKYGELKEKKNYSLKVE 572
           EIQN      EQ +    +++++++  +     V L        + G+L+ +    L   
Sbjct: 523 EIQNLIWVICEQFAVS--EREIQVLRQEYRDRAVDLEPYSQALEERGKLQAQ----LVAH 576

Query: 573 ESIIETTEKLNELTGKINEYSSLNDEISLIENKLKNLENDYKNCNYSSQFLTKNDESEFL 632
           +   +  ++L++    +    +  D    ++ +++ L+   +   Y  + L  N   + +
Sbjct: 577 DEQTQQLQQLDQQIQTLERSLAAGDFAPDLQRRVRQLDRQIQELGYRDRDL--NLAQQTV 634

Query: 633 TKKLELSKIIGDYDSSKIENEKKSLENLKDELKNTIYNLEREINLKKE--LKNIQNDISS 690
            +   +++      +++ + ++   E  +  L+  + +L++ +N   +  L   +  +  
Sbjct: 635 DQWQAIAERYAALQAAQAQQQRWDQE--RPRLETQLRDLQQALNHLSDSPLGQHRQQLQR 692

Query: 691 KIGIVECYVKWETEKSDFENKLSECKENYEKYM---ESLAVLKNYSKTYSVEINNLNEFL 747
           ++  VE  ++  T+      + +E  E Y+  +   +++  L+        ++  L + L
Sbjct: 693 QLQQVEASLRGLTDPQAAPPQ-AEVAERYQALLQAEQAMPRLQAEQADLEAQVQQLQKIL 751

Query: 748 NQKIAEKQQFCEKLLETRTEIEKNIQTVNYNPELHENAKRLYENILNEFNDILRTLERIS 807
              +A  QQ      E R  +++ I       +  + A+   E  + +     R LE I 
Sbjct: 752 TASLA--QQAAIATAEDRQPLQQAIADCQAQLQAIQAAQTNLEQAIAQLPP-SRNLEAIH 808

Query: 808 SELKLKNENISYLNEKIQNLSNKKEEKKKIEEFKEYLDKIKREIFSKDGFQKYLREKYIP 867
           ++       I+ L+E++Q +   ++E++  ++    +D+    +     + ++L+ +   
Sbjct: 809 AQ-------IARLDEQLQQI---QQEQQPAQQLATLVDRADFTVPLMRQWLRHLQLRCQH 858

Query: 868 LIQR---HTNQIFQEFELPYS-----HIQLKDDYSLIVDGLPVETLSGGEQIAVSLALRL 919
            + R      Q+  +   P S      ++L+ D         + T + GE + + LA+RL
Sbjct: 859 WLDRWGWEQGQLLWQVVSPASGAPGVQLRLQTDQG----DRSINTCADGEAVLLDLAIRL 914

Query: 920 GISKAVC----NNIECIILDEPTAYLDEDRRKNL 949
            + + +      +   +ILD P + L+  ++  L
Sbjct: 915 SLVQLLAQQPDRSSRLLILDAPFSSLNPQQKNAL 948