Pairwise Alignments

Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 1195 a.a., condensin subunit Smc from Synechococcus elongatus PCC 7942

 Score = 61.2 bits (147), Expect = 4e-13
 Identities = 97/533 (18%), Positives = 225/533 (42%), Gaps = 63/533 (11%)

Query: 3   IKNIKMENFRSHRNT-SINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFRIENLM 61
           IK I++ +F+S   T S+      T + G NGSGKS+I  A+ FAL        R + L 
Sbjct: 4   IKQIELSHFKSFGGTTSLPLLPEFTVVTGPNGSGKSNILDALLFALGLSSSKGMRADRLP 63

Query: 62  QQGAASFSV---------------------ELEFEMMGNTYLVKRKRFQHKTDDKLYVNG 100
               ++++                      E E    G    ++    +     KL V  
Sbjct: 64  DLVNSTYASRSRSTVETLVTVTFALDDWQPEAEETEEGEGTGLQPGMAEWTVSRKLRVTP 123

Query: 101 KLNAESASEINKKIEEILEIDNSVFSNAIY------IKQGEIANLIQMTPRDRKEVIGKL 154
                S   +N +   + ++   +    IY      + QG++ N+I M+PRDR+++I +L
Sbjct: 124 SGTYTSTYAMNGEACTLQQLHEQLSRLRIYPEGYNVVLQGDVTNIISMSPRDRRQIIDEL 183

Query: 155 LGI----EKYEKASEKMNIVK------KSYEETLLKLEGELTQEPEILENLEKLKNEVSE 204
            G+     K E+A  K+  VK      +  E+ L++    L ++ E  +  + L+ E + 
Sbjct: 184 AGVAQFDRKIEQAKGKLEAVKEREDRCRIVEQELIEQRDRLAKDREKAQKYQALRQEQAT 243

Query: 205 SEILKEEILKKYENLEKLKLEKNSEILQMEEKFAENNQLKENLKDIISEIKNINLEIQNF 264
            +   E +L+      +++  + S + Q+    A + Q ++ L+           +IQ  
Sbjct: 244 KQSW-EAVLRWRAGQRQVQALQRS-LAQLATDAATDQQTQQTLEQ----------QIQQT 291

Query: 265 KNSLNLVAEESKNISENEENYKKYLELELKIKELNNKLIGHKSNYESYNKLKTIEESLLK 324
           + +L+ + +  K + E EE  K    L  +  E        +   ES  + +   ++LL+
Sbjct: 292 EATLDRLNQRVKALGE-EELLKLQAALAQQEAEQRQSQRQQQELVESQTQTQQQIQALLQ 350

Query: 325 ELGVLKESLKDNKKNPDELKENLKENDEKILILDKIKEKIKELEFIEKQIYEIKIHKKTV 384
               L+   +   +    L+  + +      +  + ++ ++++E   +  + +    +  
Sbjct: 351 TQAQLQTEGQQQAEQARTLQTTIAQT-----LQPQYQQALEQVEAARQSAHALAAQSQDW 405

Query: 385 ETLFDSVKIYDDSIKTFEELKTKKNSYENLLKEKFDLEKKLQNETDEKTKLISEL-TDFE 443
            T   S++   D+I    +++ ++     L + +  L+++L+        + +EL T+ E
Sbjct: 406 VTRQTSLRQQADAIAA--QVEPQRAEQAQLQERQTQLQQQLEATQSALVTVTAELETETE 463

Query: 444 KIEEKINLENELKEKYEDLSEKIDKL-NEIVLKKESK---ISEYKNSKAELEK 492
           + E      ++ +      ++++ +L  E+ +++E++   + E ++ + +L++
Sbjct: 464 QAEGDRAALSQAEAAVVTAADQLVRLEEELQIQQETRDRLLKEQRDKQRQLDR 516



 Score = 36.2 bits (82), Expect = 1e-05
 Identities = 89/542 (16%), Positives = 210/542 (38%), Gaps = 83/542 (15%)

Query: 455  LKEKYEDLSEKIDKLNEIVLKKESKISEYKNSKAEL--EKTKDSCHVCQSKITEEKKQEL 512
            ++++ E L   +D+    +L  ++ I +  ++ ++   ++ +    V Q + T ++ Q+ 
Sbjct: 706  IRDRLEQLEVILDRSELQILNLQAAIKDAASTLSDRRQQQREQQLTVQQRQQTLQRLQQQ 765

Query: 513  LEKYNSEIQNEQLSTE-------SLKKQLEIILNKKEKMKVKLNEIDSFKLKYGELKEKK 565
             ++ N+E+Q  Q           +L  +L   L + + ++  L E++   + +GE ++++
Sbjct: 766  QQQLNAELQQRQQQASQAQARLAALALELPAALKQLKTLRQALAELEDSPI-HGEWQQRQ 824

Query: 566  NYSLKVEESIIETTEKLNELTGKINEYSSLNDEISLIENKLKNLENDYKNCNYSSQFLTK 625
               L+ +E++++  E                  +   E +L+ L+ D K     +    +
Sbjct: 825  TL-LQQQEALLQQQETA----------------LRQAEQQLQQLQTDQKRLQERA-IAAQ 866

Query: 626  NDESEFLTKKLELSKIIGDYDSSKIENEKKSLENLKDELKNTIYNLERE-INLKKELKNI 684
               S+   ++ E    +   D  +   +  ++  L+         L +E ++  +  + +
Sbjct: 867  TQVSQLRQQQGEQLNRLAQLDEQQ-RQQATAIAQLQQRQAQLEAQLGQEKVDRDRTERQL 925

Query: 685  QNDISSKIGIVECYVKWETEKSDFENKLSECKENYEKYMESLAVLKNYSKTYSVEINNLN 744
            Q   S +  +V    K + ++ + + +L++ +   +   + L             + ++ 
Sbjct: 926  QEQRSQRQNLVWQQEKRQQQQQELQQQLTDLEVQLQAEQQELPQ----------PLPDIP 975

Query: 745  EFLNQKIAEKQQFCEKLLETRTEIEKNIQTVNYNPELHENAKRLYENILNEFNDILRTLE 804
            E +      +QQ  E L      + K IQ +     L        +  L E ++ L T+E
Sbjct: 976  EMV------QQQGIEALQHELRSLAKRIQAMEPVNMLALEEYERTQARLEELSEKLTTIE 1029

Query: 805  RISSELKLKNENISYLNEKIQNLSNKKEEKKKIEEFKEYLDKIKREIFSKDGFQKYLREK 864
               +EL L+ EN + L             ++   E  E +D+  +EIF+           
Sbjct: 1030 AERTELLLRIENFTTLR------------RRAFMESFEAIDRNFQEIFA----------- 1066

Query: 865  YIPLIQRHTNQIFQEFELPYSHIQLKDDYSLIVD--GLPVETL---SGGEQIAVSLALRL 919
                   H +      +L           +LI    G PV  L   SGGE+   +L+   
Sbjct: 1067 -------HLSDGDGSLQLDNPEDPFSSGLNLIAHPKGKPVRRLASMSGGEKSLTALSFIF 1119

Query: 920  GISKAVCNNIECIILDEPTAYLDEDRRKNLLNIFKNIKTINQMAIITHHQELEQIADNIV 979
             + +   +      LDE  ++LD    + L  + +      Q  +++H + + + A+  +
Sbjct: 1120 ALQRYRPSPFYA--LDEVDSFLDGANVERLARVIRQQAQAAQFIVVSHRRPMIEAAERTI 1177

Query: 980  KV 981
             V
Sbjct: 1178 GV 1179