Pairwise Alignments
Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2
Subject, 1139 a.a., SMC family protein (RefSeq) from Shewanella amazonensis SB2B
Score = 57.4 bits (137), Expect = 6e-12
Identities = 85/389 (21%), Positives = 170/389 (43%), Gaps = 52/389 (13%)
Query: 1 MIIKNIKMENFRSHRN-TSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFRIEN 59
M +K IK+ F+S + T I F +T+IIG NG GKS++ A+ + L + R ++
Sbjct: 1 MRLKQIKLAGFKSFVDPTRIPFPNPLTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60
Query: 60 L---------MQQGAASFSVELEFE----MMGNTYL----VKRKRFQHKTDDKLYVNGKL 102
+ ++ + VEL F+ +G Y + KR + + LY L
Sbjct: 61 MTDVIFNGSSARRPVSVAGVELVFDNREGRLGGQYASYEEIAVKRQVSRDGESLYF---L 117
Query: 103 NAESASEINKKIEEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKY-E 161
N + K I ++ + I+QG I+ LI+ P++ + I + GI +Y E
Sbjct: 118 NGQKCR--RKDITDLFMGTGLGPRSYAIIEQGMISRLIESRPQELRVFIEEAAGISRYKE 175
Query: 162 KASEKMNIVKKSYEETLLKLEGELTQEPEILENLEKLKNEVSESEILKEEILKKYENLEK 221
+ + N ++ + E L+ G++ E+ + L+KL ++ E K+Y ++
Sbjct: 176 RRRDTENRIRHTREN--LERLGDI--RLELGKQLDKL--------AVQAEAAKRYREYKQ 223
Query: 222 LKLEKNSEILQMEEKFAENNQLKENLKDIISEIKNINLEIQNFKNSLNLVA---EESK-- 276
+ ++E+L M + ++ + + EI + Q+ K SL+ A +E K
Sbjct: 224 AERTTHAELLVMRYQ-----EICQQADALGREITQQDFLYQSAKTSLDTTAARLDEQKLV 278
Query: 277 ---NISENEENYKKYLELELKIKELNNKLIGHKSNYESYNKLKTIEESLLKELGVLKESL 333
+ E ++ + Y ++ L +L H E + L++ +SL +E+ L
Sbjct: 279 LAALVDEEQDTLEAYYLAGTEVARLEQQL-SHLE--ERSHSLRSRGDSLAEEISGLMARQ 335
Query: 334 KDNKKNPDELKENLKENDEKILILDKIKE 362
+ E + L ++ +L L++ ++
Sbjct: 336 ASLEAAQQEAADKLAGQEDALLGLEETQD 364
Score = 44.7 bits (104), Expect = 4e-08
Identities = 63/367 (17%), Positives = 153/367 (41%), Gaps = 27/367 (7%)
Query: 238 AENNQLKENLKDIISEIKNINLEIQNFKNSLNLV-----AEESKNISENEENYKKYLELE 292
AE L + I +E+ + +++LNL A E++ ++ ++ E
Sbjct: 625 AEAEALGARIGQIQAELAQYERAVAQQRDALNLARIHREAVEAELFEAKQQQARQQTLWE 684
Query: 293 LKIKELNNKLIGHKSNYESYNKLKTIEESLLKELGVLKESLKDNKKNPDELKENLKENDE 352
+ + E +L E L EL V E+L ++ ++ E L + E
Sbjct: 685 ASVAHQAQRAKQRAFIDEQIQRLTQQHEQSLLELEVADEALVQQEEALEQAAEALAQVRE 744
Query: 353 KILILDKIKEKIK-ELEFIEKQIYEIKIHKKTVETLFDSVKIYDDSIKTFEELKTKKNSY 411
+++ ++ E+ + + I+K + K + + T + +++ + K
Sbjct: 745 QLIPARRMAEERRASVANIDKSVEAAKATRAELATSLALIN---------QQMASGKEQL 795
Query: 412 ENLLKEKFDLEKKLQNETDEKTKLISELTDF---EKIEEKINLENELKEKYEDLSEKIDK 468
LL +K L+ +L+ +++ E E++ + + L E ++ ++
Sbjct: 796 SKLLTQKATLDAELKAQSEHSGDADREALSMKLREQLATQQTRQTALAENRSRQAQVQEQ 855
Query: 469 LNEIVLKKESKISEYKNSKAELEKTKDSCHVCQSKITEEKKQELLEKYNSEIQ-NEQLST 527
++ ++LK++ ++ + + L T +S + + + + +L + + I+ NE L +
Sbjct: 856 IDALLLKQKQEVGKIDH----LTHTLESLKLRREGLKGQGDTQLGQLAEANIRLNEVLPS 911
Query: 528 ESLKKQLEIILNKKEKMKVKLNEIDSFKL----KYGELKEKKNYSLKVEESIIETTEKLN 583
+E + EK++ K++ + + L +Y E K +K+Y + + + + E L
Sbjct: 912 VPPHASVEEWQQRLEKLRSKISRLGAINLAAIEEYDEAKARKDYLDEQDRDLEQALESLE 971
Query: 584 ELTGKIN 590
E KI+
Sbjct: 972 EAIRKID 978
Score = 33.1 bits (74), Expect = 1e-04
Identities = 102/538 (18%), Positives = 204/538 (37%), Gaps = 57/538 (10%)
Query: 455 LKEKYEDLSEKIDKLNEIVLKKESKISEYKNSK--AELEKTKDSCHVCQSKITEEKKQEL 512
LK + E L +I ++ + + E +++ +++ A + + + ++K + ++Q L
Sbjct: 623 LKAEAEALGARIGQIQAELAQYERAVAQQRDALNLARIHREAVEAELFEAKQQQARQQTL 682
Query: 513 LEKYNSEIQNEQLSTESLKKQLEIILNKKEKMKVKLNEIDSFKLKYGELKEKKNYSL-KV 571
E + + +Q++ + + E+ ++L D ++ E E+ +L +V
Sbjct: 683 WEASVAHQAQRAKQRAFIDEQIQRLTQQHEQSLLELEVADEALVQQEEALEQAAEALAQV 742
Query: 572 EESIIETTEKLNELTGKINEYSSLNDEISLIENKLKNLENDYKNCNYSSQFLTKNDE-SE 630
E +I E + N + S+ K E + Q + ++ S+
Sbjct: 743 REQLIPARRMAEERRASV-----ANIDKSVEAAKATRAELATSLALINQQMASGKEQLSK 797
Query: 631 FLTKKLELSKIIGDYDSSKIENEKKSLENLKDELKNTIYNLEREINLKKELKNIQNDISS 690
LT+K L + + + E L +L+ + + E ++ Q +
Sbjct: 798 LLTQKATLD---AELKAQSEHSGDADREALSMKLREQLATQQTRQTALAENRSRQAQVQE 854
Query: 691 KIGIVECYVKWETEKSDFENKLSECKENYEKYMESLAVLKNYSKTYSVEIN-NLNEFL-- 747
+I + K E K D L+ E+ + E L + E N LNE L
Sbjct: 855 QIDALLLKQKQEVGKIDH---LTHTLESLKLRREGLKGQGDTQLGQLAEANIRLNEVLPS 911
Query: 748 ---NQKIAEKQQFCEKLLETRTEIEKNIQTVNYNP-ELHENAKRLYENILNEFNDILRTL 803
+ + E QQ EKL R++I + + +N E ++ AK + + + D+ + L
Sbjct: 912 VPPHASVEEWQQRLEKL---RSKISR-LGAINLAAIEEYDEAKARKDYLDEQDRDLEQAL 967
Query: 804 ERISSELKLKNENISYLNEKIQNLSNKKEEKKKIEEFKEYLDKIKREIFSKDGFQKYLRE 863
E + ++ KI + K E+ L + ++F G YL
Sbjct: 968 ESLEEAIR-----------KIDR-ETRSRFKATFEQVNADLGTLFPKVFG--GGSAYLAL 1013
Query: 864 KYIPLIQRHTNQIFQEFELPYSHIQLKDDYSLIVDGLPVETLSGGEQIAVSLALRLGISK 923
L++ + + S I L LSGGE+ +L+L I +
Sbjct: 1014 TDNDLLETGVTIMARPPGKKNSTIHL---------------LSGGEKALTALSLVFAIFR 1058
Query: 924 AVCNNIECIILDEPTAYLDEDRRKNLLNIFKNIKTINQMAIITHHQELEQIADNIVKV 981
N +LDE A LD+ + + + Q I+H++ ++AD +V V
Sbjct: 1059 L--NPAPFCMLDEVDAPLDDANVDRFCRLLQEMSASVQFIYISHNKITMEMADQLVGV 1114
Score = 28.1 bits (61), Expect = 0.004
Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 18/149 (12%)
Query: 700 KWETEKSDFENKLSECKENYEKYMESLAVLKNYSKTYSVEINNLNEFLNQKIAEKQQFCE 759
+++ + D EN++ +EN E+ + L +V+ + K AE+ E
Sbjct: 172 RYKERRRDTENRIRHTRENLERLGDIRLELGKQLDKLAVQAEAAKRYREYKQAERTTHAE 231
Query: 760 KLLETRTEI------------EKNIQTVNYNPELHENAKRLYEN------ILNEFNDILR 801
L+ EI +++ + L A RL E +++E D L
Sbjct: 232 LLVMRYQEICQQADALGREITQQDFLYQSAKTSLDTTAARLDEQKLVLAALVDEEQDTLE 291
Query: 802 TLERISSELKLKNENISYLNEKIQNLSNK 830
+E+ + +S+L E+ +L ++
Sbjct: 292 AYYLAGTEVARLEQQLSHLEERSHSLRSR 320