Pairwise Alignments

Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 1020 a.a., exonuclease SbcC, putative (RefSeq) from Shewanella amazonensis SB2B

 Score = 51.6 bits (122), Expect = 3e-10
 Identities = 122/664 (18%), Positives = 257/664 (38%), Gaps = 87/664 (13%)

Query: 28  IIGQNGSGKSSIFQAMNFALFAPRGNNFRIENLMQQGAAS----FSVELEFEMMGNTYLV 83
           I G  G+GK++I  A+ FAL+     N R    M+  AA       V  EF +    Y V
Sbjct: 33  INGPTGAGKTTILDAICFALYGKTTGNEREGTQMRCDAAPDDVLTEVTFEFGLGDKVYRV 92

Query: 84  KRKRFQHKT-----------DDKLY--VNGK----LNAESASEINKKIEEILEIDNSVFS 126
           KR   Q +             D L   + G+    L A   +E+  +IE++L ++   F 
Sbjct: 93  KRMPEQQRAKKSGEGFTVQKSDALLERIEGEHTTPLAAGKVTEVTAQIEDLLGLEVEQFR 152

Query: 127 NAIYIKQGEIANLIQMTPRDRKEVIGKLL--GIEKYEKASEKMNIVKKSYEETLLKLEGE 184
             + + QG+   L+    ++R+ + G+L   GI K  + S K   ++       L+    
Sbjct: 153 QVMVLPQGQFRKLLLADSKEREAIFGQLFQTGIYKRIEDSLKQKALELKARAKELEARRA 212

Query: 185 LTQEPEILENLEKLKNEVS----------------ESEI--------LKEEILKKYENLE 220
              E    E++E L + +S                E+++          E  L+++  L 
Sbjct: 213 GILETAGAESVEALNDAISALAPELASATKAKQAAEAKLTAAKAQREAAEAKLREFSALN 272

Query: 221 KLKLEKNSEILQMEEKFA-----ENNQLKENLKDIISEIKNINLEIQNFKNSLNLVAEES 275
             +L   +E  + E   A     E   L E+L       +    E ++ + +  + AE +
Sbjct: 273 DTRLRLEAENAKAESMAALGMQLERAALAESLAGTWQAWEERAKERKSAEAAAVMAAEAA 332

Query: 276 KNISENEENYKKYL----ELELKIKELNNKLIGHKSNYESYNKLKTIEESLLKELGVLKE 331
           K    +  N K       ELE +  +L N+           ++L  + E++      L +
Sbjct: 333 KQAELSYANAKTAAAALPELEARRHQLKNEAERLAEWRPRMHRLSALNEAITG----LGQ 388

Query: 332 SLKDNKKNPDELKENLKENDEKILILDKIKEKIKEL--------EFIEKQIYEIKIHKKT 383
           +L     N   ++  L +   +I +L + +  +  L          + +Q +  + H++ 
Sbjct: 389 TLNALDANLAHVRSRLGDTQGRIAMLTQQRRDLSALASTAGSLEATLVQQTHVFERHQQL 448

Query: 384 VETLFDSVKIYDDSIKTFEELKTKKNSYENLLKEKFDLEKKLQNETDEKTKLISELTDFE 443
           +E    + K+  +  +   + +  K + +NL + +  LE  L     +   L + L    
Sbjct: 449 IEKERQAQKLATELSRLEADGRQAKANQDNLTRARELLE--LAWHQGQAAMLAARLLPGA 506

Query: 444 KIEEKINLENELKEKYEDLSEKIDKLNEIVLKKESKISEYKNSKAELEKTKDSCHVCQSK 503
                 ++E+     +E      D+L      ++        +++E +  K    V Q +
Sbjct: 507 PCPVCGSVEHPSPAHHEGALPGDDELAAAREAEQQAREMLSRARSEYKAQKQRLEVMQQE 566

Query: 504 ITE-------------EKKQELLEKYNSEIQN---EQLSTESLKKQLEIILNKKEKMKVK 547
           +               E+KQ  L +     QN    Q S ++L+ +LE + N ++++   
Sbjct: 567 LANDAAALGDALATSLEQKQYALGQRREACQNAKAAQQSLQALEHELEQLDNTQKQLLAD 626

Query: 548 LNEIDSFKLKY-GELKEKKNYSLKVEESIIETTEKLNELTGKINEYSSLNDEISLIENKL 606
           ++ +   + ++ GEL++       +  ++ E  ++L          ++L+ +I  +  ++
Sbjct: 627 IDGLQRQRDQHSGELQKACGEQESLAGAMPELCQRLGNEQAFDAHLAALSQDIEALSGQM 686

Query: 607 KNLE 610
           + L+
Sbjct: 687 EKLQ 690



 Score = 41.2 bits (95), Expect = 4e-07
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 6/98 (6%)

Query: 901  PVETLSGGEQIAVSLALRLGISKAVCN-----NIECIILDEPTAYLDEDRRKNLLNIFKN 955
            PV TLSGGE    +L+L LG+S  V        ++ + +DE    LD+D  +  +    +
Sbjct: 920  PVATLSGGESFMAALSLALGLSDVVQAYAGGIKLDTLFIDEGFGSLDQDSLELAVRTLVD 979

Query: 956  IKTINQM-AIITHHQELEQIADNIVKVRKIGENSKVSL 992
            +++  +M  +I+H  E+++     V + K    S++ L
Sbjct: 980  LQSSGRMIGVISHVTEMKEQIQTRVDIHKDTVGSQIRL 1017