Pairwise Alignments

Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 1082 a.a., exonuclease subunit SbcC from Rahnella sp. WP5

 Score = 99.0 bits (245), Expect = 2e-24
 Identities = 200/1088 (18%), Positives = 444/1088 (40%), Gaps = 173/1088 (15%)

Query: 22   SKGITSIIGQNGSGKSSIFQAMNFALF--APRGNNFRIEN-LMQQGAASFSVELEFEMMG 78
            S G+ +I G  G+GK+++  A+  AL+   PR N    +N LM +  A    E+EFE+ G
Sbjct: 29   SNGLFAITGPTGAGKTTLLDAICLALYHQTPRLNITPSQNELMTRHTAESLAEVEFEVKG 88

Query: 79   NTYLV--KRKRFQHKTDDKLYV---------NGKLNAESASEINKKIEEILEIDNSVFSN 127
              Y     ++R ++  D  L           +GK+ A+   +    I  +  +D   F+ 
Sbjct: 89   VGYRAFWSQRRAKNSPDGNLQAPKVELALLADGKILADKVRDKLDAIATLTGLDFGRFTK 148

Query: 128  AIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKYEKASEKMNIVKKSYEETLLKLEG---- 183
            ++ + QG+ A  +     DR E++ +L G E Y   S++   V + ++E  + L+G    
Sbjct: 149  SMMLSQGQFAAFLNADANDRAELLEELTGTEIYGLLSQR---VFEQHKEARIALDGLHQR 205

Query: 184  ----ELTQEPEILENLEKLKNEVSESEI-LKEEILKKYENLEKL----KLEKNSEILQME 234
                EL  E E  + LE  + E++  EI L ++  ++ ++L  L    ++++  +  Q +
Sbjct: 206  MAGIELLSE-EQRQTLEAQRAELNTQEITLSQQAQQRQQDLNWLQQWQQVQQKQQQSQQQ 264

Query: 235  EKFAENNQL--------------KENLKDIISEIKNINLEIQNFKNSLNLVAEESKNISE 280
               AE   L               E L+ ++++ +    + Q  +  L  + +      +
Sbjct: 265  LTAAEQENLTAAPQLQQLARSEPAEKLRPLLNDRQRCRDDAQRLQQLLIQLTQ------Q 318

Query: 281  NEENYKKYLELELKIKELNNKLIGHKSNYESYNKLKT-IEESLL---KELGVLKESLKDN 336
             E+   +   L L +++ +      +   E   +++T IEE +L    E+   ++SL + 
Sbjct: 319  QEQQIAQMTPLSLAVEQAHT---ARQKQAEEQRQMQTLIEEKILPLDSEIAQWRKSLVET 375

Query: 337  KKNPDELKENLKENDEKILILDKIKEKIKELEFIEKQIYEIKIHKKTVETLFDSVKIYDD 396
            ++   E ++   E+   +  +   ++K+ E         E + H      L +++ +   
Sbjct: 376  QQAVSESQKQAGEHSATLQQITAERQKLDE---------ESRQHHTRQAALTEALNVAQQ 426

Query: 397  SIKTFEELKTKKNSYENLLKEKFDLEKKLQNETDEKTKLISELTDFEKIEEKINLENELK 456
                 E+       Y  ++ +K   E  L      + +L S    F ++ +++  +++  
Sbjct: 427  RQAELEK------QYPQVVLQKRQTE--LMQLRPVRQQLFSLAQIFPQLNQRVQQQHKDF 478

Query: 457  EKYEDL---------------SEKIDKLNEI--VLKKESKISEYKNSKAELEKTKDSCHV 499
             +Y+ L                ++++ LN++  + K+E  I   +  +A L+  K +C +
Sbjct: 479  AQYQMLLAEEELRLGAIRLQCQKQLEHLNDVKALHKQEMLIVSLEAERANLQSGK-ACPL 537

Query: 500  CQS----------KITEEKKQELLEKYNSEIQNEQLSTESLKKQLEIILNKKEKMKVKL- 548
            C S          ++   +  + +EK   E    + S   L  +++ +  ++ +++ +L 
Sbjct: 538  CGSTSHPAIEHYQQVKPSETAQRVEKMQLEFDAAKASGIELAAKIKGLKEQQTRLQTQLE 597

Query: 549  ---NEIDSFKLKYGELKEKKNYSLKVEES------IIETTEKLNELTGKINEYSSLNDEI 599
                ++++  L + +L    N +  + ++      +    E+  +   +++++  L   +
Sbjct: 598  QDQQQLNAHTLNWQQLSAPLNLTFTLHDTADITQWLTARDEEEQQSQARLSQHEQLARAL 657

Query: 600  SLIENKLKNLENDYKNCNYSSQFLTKNDESEFLTKKLELSKIIGDYDSSKIENEKKSLEN 659
               ++ L +  N  +     S  LT+         +LE  +     D  +++ +    E 
Sbjct: 658  QQAKDALNDALNAQQKVQQQSALLTER------VTRLEEMQAKSQQDLVRLQKQLAEGEK 711

Query: 660  LKDELKNTIYNL--EREI-NLKKELKNIQNDISSKIGIVECYV-KWETEKSDFENKLSEC 715
               EL      L  ER++  +++ L   Q      +  V+  + K + ++     +L+  
Sbjct: 712  SLSELNARRLELFGERQVAQVREHLHQQQQATEQALSDVQTALHKAQEQRDQLAGQLAST 771

Query: 716  KE----------NYEKYMESLAVLKNYSKTYSVEINNLNEFLNQKIAEKQQFCEKLLETR 765
            ++            E+  +       ++   +V++  L++ L Q++   QQ  E L +  
Sbjct: 772  QQQQLQTAAQLTQVEQAWQQALSASGFADEAAVKLALLDDALRQQL---QQRKEHLQQQL 828

Query: 766  TEIEKNIQTVNYNPELHENAKRLYENILNEFNDILRTLERISSELKLKNENISYLNEKIQ 825
             + +  +       E H+ A+  +   L+E +  L  L    +EL    + +  L +++ 
Sbjct: 829  AQAQALLADARQQLEKHQLARPAH---LSETDSDLNALTVQQAELA---QQLKVLQQRLG 882

Query: 826  NLSNKKEEKKKIEEFKEYL--------------DKIKREIFSKDG--FQKYLR----EKY 865
             + N+ E  K+    ++ L                + + I S DG  F+K+ +    +  
Sbjct: 883  EVKNQLESDKQRHHGQQTLIAQIAQAQRTCDDWGYLNQMIGSSDGAKFRKFAQGLTLDHL 942

Query: 866  IPLIQR-----HTNQIFQEFELPYSHIQLKDDYSLIVDGL-PVETLSGGEQIAVSLALRL 919
            + L  R     H   + Q        +Q+ D +    D +    TLSGGE   VSLAL L
Sbjct: 943  VYLANRQLEKLHGRYLLQRKTSDALELQVVDTWQ--ADAVRDTRTLSGGESFLVSLALAL 1000

Query: 920  GISKAVCN--NIECIILDEPTAYLDEDRRKNLLNIFKNIKTINQ-MAIITHHQELEQIAD 976
             +S  V +   I+ + LDE    LD D     L+   ++    + + +I+H + ++    
Sbjct: 1001 ALSDLVSDKTRIDSLFLDEGFGTLDADTLDTALDALDSLNASGKTIGVISHVEAMKDRIP 1060

Query: 977  NIVKVRKI 984
              +KV K+
Sbjct: 1061 VQIKVTKV 1068