Pairwise Alignments
Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2
Subject, 1141 a.a., chromosome segregation protein SMC (RefSeq) from Shewanella loihica PV-4
Score = 70.9 bits (172), Expect = 5e-16
Identities = 154/894 (17%), Positives = 382/894 (42%), Gaps = 125/894 (13%)
Query: 1 MIIKNIKMENFRSHRN-TSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFRIEN 59
M + IK+ F+S + T I F++ +T+IIG NG GKS++ A+ + L + R ++
Sbjct: 1 MRLTQIKLAGFKSFVDVTKIPFNQPLTAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60
Query: 60 L---------MQQGAASFSVELEFE----MMGNTY-----LVKRKRFQHKTDDKLYVNGK 101
+ ++ + SVEL F+ +G Y + +++ + ++NG+
Sbjct: 61 MADVIFNGSSARRPVSVASVELSFDNQQGRLGGQYASYQAIAVKRQVSRDGESSYFLNGQ 120
Query: 102 LNAESASEINKKIEEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKY- 160
K I ++ + I+QG I+ LI+ P++ + I + GI +Y
Sbjct: 121 KCR------RKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQELRVFIEEAAGISRYK 174
Query: 161 EKASEKMNIVKKSYEETLLKLEGELTQEPEILENLEKLKNEVSESEILKEEILKKYENLE 220
E+ E N ++ + E L+ G++ Q E+ ++KL + E ++Y L+
Sbjct: 175 ERRRETENRIRHTREN--LERLGDIRQ--ELGRQIDKLAEQA--------EAARQYRALK 222
Query: 221 KLKLEKNS--EILQMEEKFAENNQLKENLKDIISEIKNINLEIQNFKNSLNLVAEESKNI 278
+ + ++++ E+ + E A++++L + + E K + +S+
Sbjct: 223 QTERDQHAQLEVAKYLELSAQSDKLSQEI-----EAKTLT---------------QSEGD 262
Query: 279 SENEENYKKYLELELKIKELNNKLIGHKSNYESYNKLKTIEESLL--KELGVLKESLKDN 336
+ E + E++LK+ EL + + + +E L ++ L++ +K
Sbjct: 263 AGREALSRNLTEIKLKLDELERQ------------EQQQVEAFYLNGNQIAKLEQEVKHR 310
Query: 337 KKNPDELKENLKENDEKILILDKIKEKIKEL---EFIEKQIYEIKIHKK---TVETLFDS 390
++ LK+ +K+++EK+ +L K +E+ L + E+Q + H+ +E L +
Sbjct: 311 QQQDAHLKQRIKQDEEKLALL-KAQEQALILARGDLDERQHGAREAHQALQLQLELLDEQ 369
Query: 391 VKIYDDSIKTFEELKTKKNSYENLLKEKFDLEK-KLQNETDEKTKLISELTDFEKIEEKI 449
+ + S++ +E +++ N + + +L K +L+++ ++ S+ + E++
Sbjct: 370 LGEVELSLEQAQEAESQAKQAVNQCQLRLELTKGELKHKQSALAQVKSQHQSASRQLEQL 429
Query: 450 NLENE---LKEKYEDLSEKIDKLNEIVLKKESKISEYKNSKAELEKTKDSCHVCQSKITE 506
+ ++E L ++ ++L+E+ + E + + + +T+ + E
Sbjct: 430 SHQDETDNLALQHAQCERLAERLDELKGEIELGAATQSQRQEQARQTQAQVEALSQSLAE 489
Query: 507 EKKQELLEKYNSEIQNEQLSTESLKKQLEIILNKKEKMKVKLNEIDSFKL--KYGELKEK 564
E+ + + K Q + L +L + +++ + + + L+ + + K+ K+ ++ +
Sbjct: 490 ERGRLAVVK-RILPQEDALQGRALWQAIQVTPGWEAAVDLLLDGLLTQKVSDKHSGMETE 548
Query: 565 KNYSLKVEESIIETTEKLNELTGKIN---EYSSLN--DEISLIENKLKNLENDYKNCNYS 619
++ S +K L+ ++N S LN D +S + L ++E+D +
Sbjct: 549 NESGFELSRS-----QKWTGLSSEVNLAPWLSRLNWADSLSQAKAMLGSIEDDERIVTAD 603
Query: 620 SQFLTKNDESEFLTKKLELSKIIGDYDSSKIENEKKSLE-------NLKDELKNTIYNLE 672
+ F+ +K E + + +++ E+++LE DE + + +
Sbjct: 604 GYIVGNG----FVLQKAEQGRQL-----VQLKAEQQALELSIAASVEAIDERRAVLAEVN 654
Query: 673 REINLKKE-LKNIQNDISSKIGIVECYVKWETEKSDFENKLSECKENYEKYMESLAVLKN 731
+ ++ ++E L + + + E+ + +E + E A LK
Sbjct: 655 QALDEQREALTQLNTSLQGT----------QLERERLMAQAQATQERIAQQGEQQARLKA 704
Query: 732 YSKTYSVEINNLNEFLNQKIAEKQQFCEKLLETRTEIEKNIQTVNYNPELHENAKRLYEN 791
+ E+ + + L++ + + Q +L E + + + H+ R +
Sbjct: 705 LLEEQIGELEAVEQSLSELTSRRDQDEAQLTELTRSADSQVAGLADRRAQHKALGRERQA 764
Query: 792 ILNEFNDILRTLERISSELKLKNENISYLNEKIQNLSNKKEEKKKIEEFKEYLD 845
+ + + ++L+ I++E L + L +++ L+ + E + E ++ LD
Sbjct: 765 LALQSQQLQQSLQAINTEQALSRQQGEQLERQMKELAQELSELQGQLEGQDKLD 818
Score = 48.1 bits (113), Expect = 3e-09
Identities = 166/937 (17%), Positives = 371/937 (39%), Gaps = 148/937 (15%)
Query: 104 AESASEINKKIEEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKYEKA 163
+ + +EI K++E LE A Y+ +IA L Q + R++ L ++ ++
Sbjct: 269 SRNLTEIKLKLDE-LERQEQQQVEAFYLNGNQIAKLEQEV-KHRQQQDAHLK--QRIKQD 324
Query: 164 SEKMNIVKKSYEETLLKLEGELTQEPEILENLEKLKNEVSESEILKEEILKKYENLEKLK 223
EK+ ++K + E+ L+ G+L + + E ++ L+ E+L + +L
Sbjct: 325 EEKLALLK-AQEQALILARGDLDER-------QHGAREAHQALQLQLELLDEQLGEVELS 376
Query: 224 LEKNSEILQMEEKFAENNQLKENLKDIISEIKNINLEIQNFKNSLNLVAEESKNISENEE 283
LE+ E ++ QL+ L E+K+ + K+ + + + +S +E
Sbjct: 377 LEQAQEAESQAKQAVNQCQLRLELTK--GELKHKQSALAQVKSQHQSASRQLEQLSHQDE 434
Query: 284 NYKKYLELELKIKELNNKLIGHKSNYESYNKLKTIEESLLKELGVL-----KESLKDNKK 338
+N + H +L ++ + ELG +E + +
Sbjct: 435 T--------------DNLALQHAQCERLAERLDELKGEI--ELGAATQSQRQEQARQTQA 478
Query: 339 NPDELKENLKENDEKILILDKI--KEKIKELEFIEKQIYEIKIHKKTVETLFDSVKIYDD 396
+ L ++L E ++ ++ +I +E + + + I + V+ L D +
Sbjct: 479 QVEALSQSLAEERGRLAVVKRILPQEDALQGRALWQAIQVTPGWEAAVDLLLDGLLT--- 535
Query: 397 SIKTFEELKTKKNSYENLLKEKFDLEKKLQNETDEKTKLISELTDFEKIEEKINLENELK 456
+++ K + E + F+L + +K +S + ++N + L
Sbjct: 536 -----QKVSDKHSGMETENESGFELSRS------QKWTGLSSEVNLAPWLSRLNWADSLS 584
Query: 457 EKYEDLSEKIDKL-----------NEIVLKKESKISEYKNSKAELEKTKDSCHVCQSKIT 505
+ L D N VL+K + + KAE + + S I
Sbjct: 585 QAKAMLGSIEDDERIVTADGYIVGNGFVLQKAEQGRQLVQLKAEQQALELSIAASVEAID 644
Query: 506 E------------EKKQELLEKYNSEIQNEQLSTESLKKQLEIILNK-------KEKMKV 546
E ++++E L + N+ +Q QL E L Q + + + ++K
Sbjct: 645 ERRAVLAEVNQALDEQREALTQLNTSLQGTQLERERLMAQAQATQERIAQQGEQQARLKA 704
Query: 547 KLNEIDSFKLKYGELKEKKNYSLKVEESIIETTEKLNELTGKINEYS-SLNDEISLIENK 605
L E + GEL+ VE+S+ E T + ++ ++ E + S + +++ + ++
Sbjct: 705 LLEE------QIGELEA-------VEQSLSELTSRRDQDEAQLTELTRSADSQVAGLADR 751
Query: 606 L---KNLENDYKNCNYSSQFLTKNDESEFLTKKLELSKIIGDYDSSKIENEKKSLENLKD 662
K L + + SQ L ++ ++ + + + ++E + K L
Sbjct: 752 RAQHKALGRERQALALQSQQLQQSLQA------INTEQALSRQQGEQLERQMKELAQELS 805
Query: 663 ELKNTIYNLER-EINLKKELKNIQ-NDISSKIGIVECYVK-WETEKSDFENKLSECKENY 719
EL+ + ++ + L+ + Q ND ++ G V+ + ++++ +N+ E
Sbjct: 806 ELQGQLEGQDKLDGKLQADAMAAQLNDALARQGEVQAALDALRLQQAELQNQADEIGAKQ 865
Query: 720 EKYMESLAVLKNYSKTYSVEINNLNEFLNQKIAEKQQFCEKLLETRTEIEKNIQTVNYNP 779
++ + L L + + ++ ++A+ + + E + ++ + ++++
Sbjct: 866 KQQLGKLEHLTQAISALKLRREGIKGQIDSQLAQIRSQEVDIAEVQATLDLTV-SLSHRQ 924
Query: 780 ELHENAKRLYENILNEFNDILRTLERISSELKLKNENISYLNEKIQNLSNKKEEKKKIEE 839
+ E K E+ L N L +E E + +++ +YL+ + +L+ K +
Sbjct: 925 KTLERTKAQIEH-LGAIN--LAAIE----EFEQQSQRKAYLDSQDADLA------KALGS 971
Query: 840 FKEYLDKIKREIFS--KDGFQKYLREKYIPLIQRHTNQIFQE-FELPYSHIQLKDDYSLI 896
+E + KI RE + K+ F K + + +F + F +++ L DD L+
Sbjct: 972 LEEAIRKIDRETKTRFKETFDK---------VNQDLGVLFPKVFGGGSAYLALTDD-DLL 1021
Query: 897 VDGLPV------------ETLSGGEQIAVSLALRLGISKAVCNNIECIILDEPTAYLDED 944
G+ + LSGGE+ +L+L I + N +LDE A LD+
Sbjct: 1022 ETGVTIMARPPGKKNSTIHLLSGGEKALTALSLVFAIFRL--NPAPFCMLDEVDAPLDDA 1079
Query: 945 RRKNLLNIFKNIKTINQMAIITHHQELEQIADNIVKV 981
+ K + Q I+H++ ++AD ++ V
Sbjct: 1080 NVDRFCRLVKEMSQSVQFVYISHNKITMELADQLIGV 1116