Pairwise Alignments
Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2
Subject, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis JJ
Score = 167 bits (422), Expect = 5e-45
Identities = 262/1194 (21%), Positives = 489/1194 (40%), Gaps = 247/1194 (20%)
Query: 3 IKNIKMENFRSHRNTSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFRIENLMQ 62
+ I M+NF+S +N+ + G T+I+G NGSGKS+ + F L + R Q
Sbjct: 4 LSEIHMKNFKSFKNSKLKIPDGFTAILGPNGSGKSNTIDGICFVLGKTSAKSLRAGKFNQ 63
Query: 63 QGAASFSVELEFEMMGNTYLVKRKRFQHKTDD-----KLYVNG--------------KLN 103
F + + K ++ +D K+ +NG K N
Sbjct: 64 LITYHNGKRENFAEVTLIFDNKDRKMPVDSDKVGISRKVKINGDNNYYLIWNEEKEVKEN 123
Query: 104 AESAS---EINKKIE--EILEIDNSVFSNA---IYIKQGEIANLIQMTPRDRKEVIGKLL 155
E + E KK++ EIL++ + +A I QG++ +I TP +R+++I ++
Sbjct: 124 GEIKTVKEEKRKKVKKSEILDVIGKISLSADGFNIILQGDLIKIIDTTPNERRKIIDEIS 183
Query: 156 GIEKYEKASEKMNIVKKSYEETLLKLEGELTQEPEILENLEKLKNEVSESEI---LKEEI 212
G+ ++++ EK KK E+ +E + E+ NLEKLK E ++E L EE+
Sbjct: 184 GVAEFDEKGEK---AKKELEKAREFIEKIDIRINEVKNNLEKLKKEKEDAETHVKLTEEL 240
Query: 213 L-------------------KKYENLEKLKLEKNSEILQMEEKFAENNQLKENLKDIISE 253
K E +E LK K + ++ E A++N ++ L+++I+E
Sbjct: 241 KATKYILTSKKIEFLNGILEKTKEEIEALKEMKVCFLKEISEYDAKSNDIRNRLQNLINE 300
Query: 254 ---------------IKNINLEIQNFKNSLNLVAEESKNI-SENEENYKKYLELELKIKE 297
IK + + + N K SLN ++ KN+ S++E+ + +E KI+
Sbjct: 301 LNEKGNEEIMELHKSIKEMEVTVDNDKKSLNGALDDLKNVNSQSEKKGQDLVETRQKIET 360
Query: 298 LNNKLIGHKSNYESYNKLKTIEESLLKELGVLKESLKDNKKNPDELKENLKENDEKI--- 354
+ + + ++ N LKT E+L E LK +++++ + LK+ ++ E+I
Sbjct: 361 IRTETLQKEA---EINTLKTEMENLETEKKKLKSKVEESETQTEILKQQERKLSERINES 417
Query: 355 -LILDKIKEKIKELE-FIEKQIYEIKIHKKTVETL-----------FDSVKIYDDSIKTF 401
L K + LE I K+ + + +K+T+ETL D+ +Y +
Sbjct: 418 QNELYNFKNEFNALENEINKKSFNLTKNKETIETLQKELEEIRSEHEDTKSLYKELEDVA 477
Query: 402 EELKTKKNSYENLLKEKFDLEKKLQN------ETDEKTKLISELTDFE-----------K 444
EL+ K LL+ K + ++KL + + K K + ++ DF K
Sbjct: 478 VELEYSKKKVVTLLENKKEYQEKLDKSHADYIKENAKIKAMKDMEDFSLDRAVKSVLEAK 537
Query: 445 IEEKINLENELKEKYEDLSEKID-----KLNEIVLKKESKISEYKNSKAELEKTKDSCHV 499
+ +++ L + + I+ +LN IV+K+ + + K +
Sbjct: 538 LPGVVDIAGNLGKTDAEYKTAIENAGGNRLNYIVVKRMDDGAR----AIQYLKKNNLGRT 593
Query: 500 CQSKITEEKKQELLEKYNSEIQNEQLSTESLKKQLE-----------IILNKKEKMKVKL 548
+ E L Y+ I + K + E I+ N +
Sbjct: 594 TFLPLDRINGPEALYLYDEGIVGRAIDLVEFKPEYENLFRYVFGNTIIVENLDYAKTLSK 653
Query: 549 NEIDSFKLKYGELKEKKNYSL---KVEESIIET---TEKLNELTGKINEYSSLNDEISLI 602
+ F GE+ E + ++S+I+ T KL +L +I+E L+ +S
Sbjct: 654 DHKARFVTLEGEVIEPSGAMIGGRSRKKSVIKVDIDTSKLEKLAEQISE---LDGTLSET 710
Query: 603 ENKLKNLENDYKNCNYSSQFLTKNDESEFLTKKLELSK--IIG---------DYDSSKIE 651
+++++ L+N KN YS++ + + + K LE K I+ + +S K+E
Sbjct: 711 KDEIERLQN--KNATYSTRKMELESRLKII-KDLEHKKEGILTNNGVKIKELELESRKLE 767
Query: 652 NEKKSLENLKDELKNTIYNLEREIN--------LKKELKNIQN-DISSKIGIV-ECYVKW 701
E LE K+EL+ I ++I+ + +E+ + +N + S +I ++ E + +
Sbjct: 768 EELDYLEGSKEELERKIEEFTKKISGFTTQRERISEEIASFENSEHSKRIKVIDETILNF 827
Query: 702 ETEKSDFEN---------------KLSECKENYEKYMESLAVLKNYSKTYSVEINNLNEF 746
E +K++FEN K+SE N ++ E +L+ + Y + E
Sbjct: 828 EKKKNEFENEIKRDAVLIKEVLIPKISELNSNIKELSEKKTILEQNIQFYKNNVEKNFEI 887
Query: 747 LNQK-------------IAEKQQFCEKLLETRT--------EIEKNIQTVN--------Y 777
L K + EK++ EK LE I +N +N Y
Sbjct: 888 LKTKKERYEDLTKDLRELTEKKEAFEKELEILNGEKRRVYGRINQNESQINSLSIDKAKY 947
Query: 778 NPELHENAKRLYENILNEFNDILRTLERISSEL--KLKNENISYLNEKIQNLSN--KKEE 833
L E ++LY + +E+IS ++ K+K ++ L +L KK E
Sbjct: 948 ETRLEEEDRKLY---------VCENIEQISEDITSKIKEFDVDALESHQIDLEGHIKKLE 998
Query: 834 KKKIEEFKEYLDKIKR--EIFSKDGFQKYLREKYIPLIQ---RHTNQIF--------QEF 880
+ +Y + R E+F K + +KY+ LI+ + ++F + +
Sbjct: 999 PVNMRAIDDYQYIVDRYDELFEKRTDYENEEKKYLHLIEEVSKRKKEVFMDVYLKVAENY 1058
Query: 881 ELPYSHI---------QLKDDYS--LIVDGLP-------VETLSGGEQIAVSLALRLGIS 922
E Y+ I +D +S L++D P ++ +SGGE+ +LA I
Sbjct: 1059 EKIYTEIGGSGKLSLENPEDPFSGGLLIDASPMNKKLQSLDVMSGGEKSLTALAFLFAIQ 1118
Query: 923 KAVCNNIECIILDEPTAYLDEDRRKNLLNIFKNIKTINQMAIITHHQELEQIAD 976
N +LDE A LD + + KN +Q +I+H +++ +D
Sbjct: 1119 H--LNPAPFYVLDEVDAALDTKNAGLIGEMIKNASKDSQFIVISHREQMISKSD 1170