Pairwise Alignments

Query, 993 a.a., AAA family ATPase from Methanococcus maripaludis S2

Subject, 1145 a.a., SMC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 67.8 bits (164), Expect = 4e-15
 Identities = 117/560 (20%), Positives = 243/560 (43%), Gaps = 86/560 (15%)

Query: 1   MIIKNIKMENFRSHRN-TSINFSKGITSIIGQNGSGKSSIFQAMNFALFAPRGNNFRIEN 59
           M +K IK+  F+S  + T I F + +++IIG NG GKS++  A+ + L      + R ++
Sbjct: 1   MRLKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 60  L---------MQQGAASFSVELEFEMMGNTYLVKRKRFQHKTDDKLYVNGKLNAESASEI 110
           +          ++  +   VEL FE         R   Q+ + +++ V  +++ +  S  
Sbjct: 61  MSDVIFNGSSARKPVSVAGVELVFENKEG-----RLAGQYASYEEISVKRQVSRDGESWY 115

Query: 111 --------NKKIEEILEIDNSVFSNAIYIKQGEIANLIQMTPRDRKEVIGKLLGIEKYEK 162
                    K I ++         +   I+QG I+ LI+  P+D +  I +  GI +Y  
Sbjct: 116 FLNGQKCRRKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAGISRY-- 173

Query: 163 ASEKMNIVKKSYEETLLKLEGELTQEPEILENLEKLKNEVSESEILKEEILKKYENLEKL 222
                   K+   ET    E  +    E LE L  +++E+              + L+KL
Sbjct: 174 --------KERRRET----ESRIRHTRENLERLGDIRSELG-------------KQLDKL 208

Query: 223 KLEKNSEILQMEEKFAENNQLKENLKDIISEIKNINLEIQNFKNSLNLVAEESKNISENE 282
             +  +     E K AE     E L     E+++    +    NSL L    ++++++  
Sbjct: 209 SQQAKAATQYRELKQAERKTHAELLVMRFQELQSQMASLSEQINSLELQQAAAQSLAQTS 268

Query: 283 ENYKKYLELELKIKELNNKLIGHKSNYESYNKLKTIEESLLKELGVLKESLKDNKKNPDE 342
           E   +  EL++K+ +L  +    +   E+Y    T       E+  L++ L+  K+   +
Sbjct: 269 E--LESTELQVKLSQLAEQ---EQHAVEAYYLTGT-------EIAKLEQQLQSQKQRDAQ 316

Query: 343 LKENLKENDEKILILDKIKEKIKELEF--IEKQIYEIKIHKKTVETLFDSVKIYDDSIKT 400
           L   L++  E+ L  +K K    +  F  +E ++ ++    +  + + D ++   +   +
Sbjct: 317 LHTQLEQLSEQ-LTQNKAKLDTYQASFHALEAELGQLAPQHELQQEMMDELQAQWEMSVS 375

Query: 401 FEELKTK--KNSYENLLKEKFDLE---KKL---QNETDEKTKLISELTDFEKIEEKINLE 452
             E +T+  +     + + K  LE    KL   Q     KT+L  E    ++ E     E
Sbjct: 376 RSEAQTEVARTQASAVAQHKLQLELHRSKLVHQQQLNAHKTQLHQE----QQQELSSLTE 431

Query: 453 NELKEKYEDLSEKIDKLNEIV-----LKKESKISEYKNSKAELEKTKDSCHVCQSKITEE 507
           + L++    LS++I+ L +++     + +E +++  +N++A L+  +        ++T  
Sbjct: 432 HALEDTSASLSQEIELLEQVITQQIEVNQELELALVENTQA-LDLARGEFEQLSQRLTSM 490

Query: 508 KKQ-ELLEKYNSEIQNEQLS 526
           + + EL+E++ +  + E+LS
Sbjct: 491 RARFELVEQWLA--KQEELS 508