Pairwise Alignments

Query, 384 a.a., 50S ribosome-binding GTPase from Methanococcus maripaludis S2

Subject, 313 a.a., GTP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 98.2 bits (243), Expect = 3e-25
 Identities = 72/258 (27%), Positives = 138/258 (53%), Gaps = 13/258 (5%)

Query: 21  RRMVHKIIYECNIVLLVVDARDPETTRNRALEEYTIEKNKKLIYVINKSDLVPKKILEKW 80
           R+ + + + + ++V+ V+DAR P ++ N  + +  +  +K  I ++NKSDL   ++  +W
Sbjct: 14  RKEIEEAMPQVDLVIEVLDARIPYSSENPMVSK--LRGDKPCIKLLNKSDLADPEVTAQW 71

Query: 81  KNKFKSENPDSSVVFVSAKEKLGTKMLRDEIKTYLNSNNIKYGQVG--IVGYPNVGKSSI 138
               + E    +    + +  +  KML D  +  + S +     +   I+G PNVGKS+I
Sbjct: 72  IEYLEREQGVKATAITTLQPGM-LKMLPDLCRKLVPSRDKTEKDIRTMIMGIPNVGKSTI 130

Query: 139 INALTGKKSARSGLTAGLTVGEQWVKLTKDIKLLDSPGIIEPKDEDE-----LVISGALR 193
           IN L G+  A++G    +T  +Q + L   I L D+PGI+ PK ++E     L ++GA++
Sbjct: 131 INTLAGRVIAKTGNEPAVTKTQQRINLRNGIVLSDTPGILWPKVDNEASSYRLAVTGAIK 190

Query: 194 YEKADDIISPALKILNR-IHTFDNTILKEYYGFEIGEEINIELLEKIGTKLNFLTKDGKI 252
            + A +    AL      +  +   I + Y   E+ ++ ++ LLE+IG K   L   G+I
Sbjct: 191 -DTAMEYEDVALFAAGYFLKAYPKEICERYNISELPKD-DMALLEEIGRKRGALRPGGRI 248

Query: 253 DIDRTSKSIIREFQNGKL 270
           D+ + S+ ++ E+++GK+
Sbjct: 249 DLHKASELLLHEYRSGKI 266