Pairwise Alignments

Query, 52 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 558 a.a., 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 41.2 bits (95), Expect = 7e-09
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 9   GCAGCVPFCPVGAISAFG-KAEIDTEMCTNCAVCKDYCPLDAIS 51
           GC+ C+ FCP  AI++   K EID  +C     C + CP  AIS
Sbjct: 199 GCSRCLNFCPADAIASVDHKIEIDPYLCHGAGSCTNACPTGAIS 242



 Score = 35.4 bits (80), Expect = 4e-07
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)

Query: 5   DKCVGCAGCVPFCPVGAISAFGKAE---IDTEMCTNCAVCKDYCPLDAIS 51
           D C  C  CV  CP  A++  G+        + C  C +C+  CP   IS
Sbjct: 426 DNCTLCLSCVSTCPTQALTDGGEKPALYFVEQACVQCGLCESACPEKVIS 475



 Score = 31.6 bits (70), Expect = 6e-06
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 2   EILDKCVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAISE 52
           E +D     A     C   +   +GK  ++T+ CT C  C   CP  A+++
Sbjct: 395 EAIDHLNSQAASTDACLSKSNIPYGKVSVNTDNCTLCLSCVSTCPTQALTD 445



 Score = 24.3 bits (51), Expect = 0.001
 Identities = 9/17 (52%), Positives = 9/17 (52%)

Query: 7   CVGCAGCVPFCPVGAIS 23
           C G   C   CP GAIS
Sbjct: 226 CHGAGSCTNACPTGAIS 242



 Score = 21.6 bits (44), Expect = 0.006
 Identities = 11/44 (25%), Positives = 15/44 (34%)

Query: 7   CVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAI 50
           CV C  C   CP   IS   +   D     +     +  P + I
Sbjct: 459 CVQCGLCESACPEKVISLTPQINFDATARQSRQTLNEEAPFECI 502