Pairwise Alignments

Query, 52 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 481 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 48.5 bits (114), Expect = 4e-11
 Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 7  CVGCAGCVPFCPVGAI--SAFGKAEIDTEMCTNCAVCKDYCPLDAI 50
          C+ C  C   CP GAI  + +G   ++ ++CT C +CK+ CP+D I
Sbjct: 45 CITCGTCAKECPTGAIKKNEYGGYYVNRKLCTGCGICKNACPIDII 90



 Score = 43.1 bits (100), Expect = 2e-09
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)

Query: 5   DKCVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAI 50
           +KCV C  C+  CP   I    +AEI  + CT C +C + CP+DAI
Sbjct: 179 EKCVECGKCIYVCPKDTII---EAEI-VDGCTRCNICNEVCPVDAI 220



 Score = 40.8 bits (94), Expect = 9e-09
 Identities = 20/44 (45%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 7   CVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAI 50
           CV C  C   CP  AI    K EI TE C  C+ C + CP  AI
Sbjct: 430 CVKCGLCTIICPNDAID---KGEITTERCEYCSACVNICPTRAI 470



 Score = 38.5 bits (88), Expect = 4e-08
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 2   EILDKCVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAI 50
           EI+D C  C  C   CPV AI  +G+    TE C  C  C   CP DA+
Sbjct: 200 EIVDGCTRCNICNEVCPVDAIK-YGEV---TENCILCGNCISKCPKDAL 244



 Score = 38.1 bits (87), Expect = 6e-08
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 7   CVGCAGCVPFCPVGAISAFGKAE---IDTEMCTNCAVCKDYCPLDAIS 51
           CV C  C+  CP  AIS   +++   ID + C  C  C   CP DAI+
Sbjct: 321 CVLCEVCIKECPEDAISIKERSKFTSIDKKECIACGTCSMVCPNDAIT 368



 Score = 37.7 bits (86), Expect = 7e-08
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 2   EILDKCVGCAGCVPFCPVGA--ISAFGKAEIDTEM-------CTNCAVCKDYCPLDAI 50
           E+ + C+ C  C+  CP  A  IS F   +   ++       C NC +C D CP +A+
Sbjct: 224 EVTENCILCGNCISKCPKDALEISEFKVVKTKEDVKANPEKHCINCGLCVDKCPSNAL 281



 Score = 35.0 bits (79), Expect = 5e-07
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)

Query: 7   CVGCAGCVPFCPVGAIS----AFGKAEIDTEMCTNCAVCKDYCPLDA 49
           C GC  C   CP+  I     + GKA   T MC  C +C   CP +A
Sbjct: 75  CTGCGICKNACPIDIIDIREDSTGKA-YPTGMCVMCGLCTTECPYNA 120



 Score = 34.7 bits (78), Expect = 6e-07
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 7   CVGCAGCVPFCPVGAIS-AFGKAEIDTEMCTNCAVCKDYCP 46
           C+ C  CV  CP  A+    GK   D + CT C  C   CP
Sbjct: 266 CINCGLCVDKCPSNALRFENGKILYDPKTCTLCNTCVKECP 306



 Score = 33.5 bits (75), Expect = 1e-06
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 5   DKCVGCAGCVPFCPVGAI---SAFGKA--------EIDTEMCTNCAVCKDYCPLDAISE 52
           D CV C  C   CP   I   S + K          +D   C  C +C   CP DAI +
Sbjct: 389 DNCVLCEKCAIHCPRDVIENTSGYKKVVDPENSYIRVDDGYCVKCGLCTIICPNDAIDK 447



 Score = 30.4 bits (67), Expect = 1e-05
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 6   KCVGCAGCVPFCPVGAISA------FGKAEIDTEM-----CTNCAVCKDYCPLDAI 50
           +C+ C  C   CP  AI+       F   ++ +E+     C  C  C  +CP D I
Sbjct: 351 ECIACGTCSMVCPNDAITVKIDSLNFSGNKVHSEVIFNDNCVLCEKCAIHCPRDVI 406



 Score = 27.7 bits (60), Expect = 8e-05
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 30  IDTEMCTNCAVCKDYCPLDAISE 52
           ID+E C  C  C   CP D I E
Sbjct: 176 IDSEKCVECGKCIYVCPKDTIIE 198



 Score = 24.6 bits (52), Expect = 6e-04
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 5   DKCVGCAGCVPFCPVGAISAF 25
           ++C  C+ CV  CP  AI  +
Sbjct: 453 ERCEYCSACVNICPTRAIRIY 473