Pairwise Alignments

Query, 52 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

Subject, 397 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 52.4 bits (124), Expect = 2e-12
 Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 3   ILDKCVGCAGCVPFCPVGAISAFG-KAEIDTEMCTNCAVCKDYCPLDAI 50
           + + CVGC  C+  CPVGA+S  G KA +D   C  C++C   CP +AI
Sbjct: 131 VTEDCVGCGVCISECPVGALSIEGEKAVVDKNSCIYCSICAQTCPWNAI 179



 Score = 39.7 bits (91), Expect = 2e-08
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 13/61 (21%)

Query: 3   ILDK--CVGCAGCVPFCPVGAISAFGKAE-----------IDTEMCTNCAVCKDYCPLDA 49
           ++DK  C+ C+ C   CP  AI   GK             +D+++C  C  C D CP D 
Sbjct: 158 VVDKNSCIYCSICAQTCPWNAIFVAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDL 217

Query: 50  I 50
           I
Sbjct: 218 I 218



 Score = 39.3 bits (90), Expect = 2e-08
 Identities = 16/46 (34%), Positives = 21/46 (45%)

Query: 5   DKCVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAI 50
           D C+GC  C   CP   I       +  + C  C +C   CP+DAI
Sbjct: 201 DLCIGCGDCTDKCPRDLIVLNEMVAVPPKGCPACGLCMAACPVDAI 246



 Score = 37.0 bits (84), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 13/58 (22%)

Query: 7   CVGCAGCVPFCPVGAISAFGKAE-------------IDTEMCTNCAVCKDYCPLDAIS 51
           CVGC  CV  CP   +   G  E               TE C  C VC   CP+ A+S
Sbjct: 94  CVGCMKCVEACPDDYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALS 151



 Score = 35.4 bits (80), Expect = 3e-07
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 9/54 (16%)

Query: 7   CVGCAGCVPFCP-----VGAISAFGKA----EIDTEMCTNCAVCKDYCPLDAIS 51
           C+ C  CV  CP     +G I   GK     E    +C +C  C + CP D ++
Sbjct: 310 CIRCGACVQSCPNDALRIGKIIHDGKEYERIEFSPNLCDSCGKCIETCPYDMLN 363



 Score = 32.7 bits (73), Expect = 2e-06
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 5   DKCVGCAGCVPFCPVGAISAFGKAEIDT------------EMCTNCAVCKDYCPLDAI 50
           +KC  C  C   CP  AI+      ++             +MC  C  C   CP DA+
Sbjct: 268 EKCAYCGPCAIKCPNNAINVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDAL 325



 Score = 30.4 bits (67), Expect = 1e-05
 Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 7   CVGCAGCVPFCPVGAISA---FGKAEI--------DTEMCTNCAVCKDYCPLDAIS 51
           C  C  C+  CPV AI     +G  +         D E C  C  C   CP +AI+
Sbjct: 231 CPACGLCMAACPVDAIELVVEYGSPKPITDEGIVWDEEKCAYCGPCAIKCPNNAIN 286



 Score = 30.0 bits (66), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 7   CVGCAGCVPFCPVGAISAFGKAEIDTE-MCTNCAVCKDYC 45
           C  C  C+  CP   ++  GK E   E  C  C  C + C
Sbjct: 347 CDSCGKCIETCPYDMLNLTGKPEKPLEGFCVMCLKCIEAC 386



 Score = 27.3 bits (59), Expect = 8e-05
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 5  DKCVGCAGCVPFCPVGAISAFGKAEIDTEMCTNCAVCKDYCPLDAIS 51
          + C  C  C   CP  A+          ++C  C  C + CP DA++
Sbjct: 7  EDCYMCKACENSCPTEALKLN-----PFKVCQLCGNCVNACPNDALN 48



 Score = 26.9 bits (58), Expect = 1e-04
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 29 EIDTEMCTNCAVCKDYCPLDAI 50
          +I+TE C  C  C++ CP +A+
Sbjct: 3  KINTEDCYMCKACENSCPTEAL 24



 Score = 26.9 bits (58), Expect = 1e-04
 Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 7/47 (14%)

Query: 6   KCVGCAGCVPFCPVGAISAFGKAEID--TEMCTNCAVCKDYCPLDAI 50
           KC  C  CV  CP        K E D     C  C  C + CP D +
Sbjct: 68  KCDLCGECVKVCPNNL-----KIENDKLKGFCVGCMKCVEACPDDYV 109